Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04554 ATGTCGTCAAGCTTCATGAAAGAGGAAGATTCTAACCCAAATGTTGAGTTTACTGATGAAAATGTAAAGAGCAACCCAGATAGAGCTCAAGAGAATAATAACTTGAGATCCATAAATGACATGTCTCAAACTATTTTCCTTTTCAAGAAATACTTGCCCACTAGGGGTCAAAGTAGCATCAGAAAAACAAACACAGAAGAATCAGAAATAATCAAAAGGTGTCCCCCCAATGCCCTATTACCACATCCACCAAAATGTGAACCCGGGTTTCAAAGGCAAGCTTCTTTACTAGAGCAAAGGCTTCTTCCACAATTGAGGTGTGATGGAGCACCTTCATCTGTGTCAGAAGATAGGTCTTCAACAGCACAACTTACAATATTTTATGGAGGTGCTATAAATGTTTACGATAACATTCCTGCTGACAAGGCTCAAGCTATCATGCTTCTAGCTAGTGAGAGCTCATTATCAAATATTATAGGAACAGAAATTCCAAAAGCGCATACAAAAGTACCATCTTATCGATCTAATGTGACACTGATAAACAAATCAAAAACAGAGATTCAGATAGCAAGAAAGTATTCTCTTCAATGTTTCCTCAAGAAACGTCGAAACAGGATACTTAACAGATCACCCCATGCGTCTCCTAGCAAAAACTCATGTTCAAGGAAAATGGCTGACATGACATGGAAAGTCCCATTCGGTTCTATCAGTTCAGATTTGTGA 723 0.3845 MSSSFMKEEDSNPNVEFTDENVKSNPDRAQENNNLRSINDMSQTIFLFKKYLPTRGQSSIRKTNTEESEIIKRCPPNALLPHPPKCEPGFQRQASLLEQRLLPQLRCDGAPSSVSEDRSSTAQLTIFYGGAINVYDNIPADKAQAIMLLASESSLSNIIGTEIPKAHTKVPSYRSNVTLINKSKTEIQIARKYSLQCFLKKRRNRILNRSPHASPSKNSCSRKMADMTWKVPFGSISSDL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04554 240 SMART tify_2 117 152 IPR010399 -
Rops2g04554 240 MobiDBLite consensus disorder prediction 1 36 - -
Rops2g04554 240 Pfam tify domain 119 151 IPR010399 -
Rops2g04554 240 MobiDBLite consensus disorder prediction 12 26 - -
Rops2g04554 240 ProSiteProfiles Tify domain profile. 117 152 IPR010399 -
Rops2g04554 240 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 36 221 IPR040390 -
Rops2g04554 240 Pfam Jas motif 188 211 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04554 Rops-Chr2 83271494 83272749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04554 123 212 Tify Gene Family AT5G20900 33.645 5.33e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops2g04554 tify 1.8e-17 No_clan