Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04546 ATGGTGCTGGTTGATGCCAAGAACAAGGGTCGAATGGAGCTTCTACAAGATGATCAAGATAGACATAACATGGCGGTGGAAAATAAATGCAAGCTCTTGAACAGTCAGACGAAGCAAGCAACATCTGATGAGGCTCAGTCACAAAAGTTTGCAAGCTCCATGAAGGTTGCAACAGAAGGAACATCCTCTCGTGGTGAGGCCTTATCATCTGCTGTGATTCGAGCAGAGCAGGTCCAATCAAATCTGCAACCAGAATTCCCTAGTTTTGTGAAGTCCTTGGTCAGATCACATGTTGCTAGTTGCTTTTGGATGGGGTTGCCTGTGGCATTCTGTAAAAGACACTTACCAGATAAGGATACAACTATCACTTTGGAAGATGAATCTGGTAGAGAATACAAGACGAAATACATTGCGTGTAAGACAGGTTTGAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCATAAGTTGCAGGAGGGTGATGTGGTTGTCTTCCAATTAGTGGAACCTGCCAAATTTAAGGTTTACATCATAAGAGCTAATAATTTGAAGGAACTAGATGGGGCCCTTCAGAATATAGACAGTTATATAAAACAAAAAATGGCAGGCAGAAACAACACAGACACTGTTGCTGTAGCATGTAATAGCCCAAAAAGAAAACAAGGGAAATCTGTCCCACTAGATGTCCAAAAGAAAAAGAAGATCAGCGTGTCAAGAATGGTGCCTAAGGCTTGGCAGTCTGTTGAACAATCCGAAAATGATAGTGAGGAAGCTCTCTCAGATGTAGTGGAGAGCTTCAAAATGCTTGAATTCAAAGATATAAAAGGTTTTGAAAGCTTCAGCATCATAGTTGATGGAATGCCTATAGATGCTGAGGTCTCTACAGAAATTCGAAACAAGTACTACAAGCTTTGCTGCAGTCAACAATCCTTTCTTCATGAAAACCTCATCAAGGGCATGAACCATAAGCTGATTGCTGGAATGATAGCTGAAACTGTGAACATTGCTGATGCCATAAAAATTAGTGTGATATCTACCCCACGTGTTGAATTTGCTCATTGGGATAAAACTTTGCTTGCATTTGAGCATTTGGGCATGAATGTTCAGTTTTTAAGAGTCAAGTTGCGCCGGCTTGTAAGCCTTGCCTATGAAACTGATGATGCCTTAGAGACCAGAAGATACTTGGCATATAGAATTGAACACTGTCGAGCAGATGATGAAATAAAGAACATGGAAACCAAGCTGGAAGAATTGAAGGGTGCTTGTAATGATTTTAGTGCTTATCTTGGGAGTTTGAAATGGAAAGCTGAAAGCTATCAGCTCAAGTTTCAGAGAGAGGTTGCTGCTCCTTGGTGA 1353 0.4139 MVLVDAKNKGRMELLQDDQDRHNMAVENKCKLLNSQTKQATSDEAQSQKFASSMKVATEGTSSRGEALSSAVIRAEQVQSNLQPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLQEGDVVVFQLVEPAKFKVYIIRANNLKELDGALQNIDSYIKQKMAGRNNTDTVAVACNSPKRKQGKSVPLDVQKKKKISVSRMVPKAWQSVEQSENDSEEALSDVVESFKMLEFKDIKGFESFSIIVDGMPIDAEVSTEIRNKYYKLCCSQQSFLHENLIKGMNHKLIAGMIAETVNIADAIKISVISTPRVEFAHWDKTLLAFEHLGMNVQFLRVKLRRLVSLAYETDDALETRRYLAYRIEHCRADDEIKNMETKLEELKGACNDFSAYLGSLKWKAESYQLKFQREVAAPW* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04546 450 CDD B3_DNA 87 178 IPR003340 GO:0003677
Rops2g04546 450 Pfam B3 DNA binding domain 89 179 IPR003340 GO:0003677
Rops2g04546 450 SUPERFAMILY DNA-binding pseudobarrel domain 82 180 IPR015300 -
Rops2g04546 450 Gene3D - 70 182 IPR015300 -
Rops2g04546 450 MobiDBLite consensus disorder prediction 37 62 - -
Rops2g04546 450 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 181 IPR044837 -
Rops2g04546 450 SMART B3_2 89 180 IPR003340 GO:0003677
Rops2g04546 450 ProSiteProfiles B3 DNA-binding domain profile. 89 180 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04546 Rops-Chr2 83072229 83076831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04546 71 181 B3 DNA Binding Superfamily AT3G19184 51.351 1.83e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops2g04546 B3 1.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04546 - - gmx:100819237 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04546 2 83072229 83076831 Rops2g04546 2 83072229 83076831 ECH