Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04541 ATGGCTGTTCCCTTTTGGAGTGGTGGTGGAGGAGGATCATTACTAGCATTACCGGATCAGGAGCTAGAGAACTCTATCATAGTGTCGGCCCTTACACACGTTATCTCCTATGATGCTTCTTCTAACGTGACTAATGCTATTCATGATCATGTTCCTGTTATTCATGATGATGATTACCAATACCAATACCAATTCCACCACTTGCATGGCACTTCTTATCAGATTCAGACACTTCCCAACCAACTTGAGGGATCAGGGGCAGCCACGTCATGGTCCTCTTGGGCCAGTGGGTCCCTGCTGTCCTACCAGCACCAATCTGATCCTGACACGTGTCGTGTGGATGAGAAGGGAAAGAGGAAGAAGAAGTACAGGGGAGTGAGGCAGAGGGCATGGGGGAAATGGGTGGCAGAGATTCGAGACCCACGAAGGGCCACTCGGGTGTGGCTGGGCACCTTTGAGACTGCAGAGAAAGCAGCAAGGGCTTATGACAGAGCTGCCATTCAGTTTCATGGGGCTAAAGCTAAGATCAATTTTAGCATCTCTGACTATACAGTTGCACATAAGCAAAGTGCAGCAGAGGATGCAGGGGTCAAACCTACTCATTCAGAGAACTAG 615 0.4911 MAVPFWSGGGGGSLLALPDQELENSIIVSALTHVISYDASSNVTNAIHDHVPVIHDDDYQYQYQFHHLHGTSYQIQTLPNQLEGSGAATSWSSWASGSLLSYQHQSDPDTCRVDEKGKRKKKYRGVRQRAWGKWVAEIRDPRRATRVWLGTFETAEKAARAYDRAAIQFHGAKAKINFSISDYTVAHKQSAAEDAGVKPTHSEN* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04541 204 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Rops2g04541 204 FunFam Ethylene-responsive transcription factor 2 121 180 - -
Rops2g04541 204 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Rops2g04541 204 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Rops2g04541 204 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Rops2g04541 204 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Rops2g04541 204 PANTHER DNA-BINDING DOMAIN 95 188 IPR044808 GO:0003700|GO:0009873
Rops2g04541 204 Gene3D AP2/ERF domain 121 181 IPR036955 GO:0003700|GO:0006355
Rops2g04541 204 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Rops2g04541 204 CDD AP2 126 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04541 Rops-Chr2 82990837 82991451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04541 101 178 AP2-EREBP Transcription Factor Family AT5G13330 65.385 2.11e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g04541 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04541 - - lja:Lj0g3v0306799.1 145.591