Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04531 ATGGATGTGGACATAATGAAAACTTGGGTGAGTGATGGCAGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGATTTCTATGAACCTTTTTATAACACTCCCACTTACCAAGAAAACGAGTTATCTGGTGGTGGCAGCTCCACCTCCACCAACACCACCACTGTGCCATTATTTAACGTTAACCCAAATGAACCTCCACCACCGACATTGATTAATCCACCACACTCCAATAATGTCAATTTCATCAACAACAACACTACCCAACAACAACAACCCATGACACCACCGCCCTTTCAACAACAACAACCAAATGAGGTGAATCTATCAGGGAGAACTTCATTTCCTTTCCCTTCAGCAGAGAAAAAGAATTCCATGGCAGCCATGAGGGAAATGATTTTCAGAATAGCAGTGATGCAACCTATTCATATAGACCCGGAATCTATAAAGCCACCAAAGAGAAGGAACGTGAAGATTTCAAAGGATCCACAAAGTGTGGCTGCGAGGCATAGAAGGGAAAGGATAAGTGAGAGGATGAGGATCTTGCAGAGATTAGTTCCTGGTGGCACCAAAATGGACACTGCTTCTATGTTAGATGAAGCTATACACTACGTGAAGTTCTTGAAGAAACAGGTGCAGACTTTGGAACAAGCAGGGGCAAGTAGATCCATTGGTGGTGTTGGTTTTCCAGGGTTGTCAAACTCCAATGTCAACAACTATTCTGCTTTGATGATGAAGGGTTGCCAACCTTGTCACATGGTGGGTTCTACTTCTAAACAGTTACTCAGCTGA 801 0.4332 MDVDIMKTWVSDGSMDMMAMMMQMEKFPDFYEPFYNTPTYQENELSGGGSSTSTNTTTVPLFNVNPNEPPPPTLINPPHSNNVNFINNNTTQQQQPMTPPPFQQQQPNEVNLSGRTSFPFPSAEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERMRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRSIGGVGFPGLSNSNVNNYSALMMKGCQPCHMVGSTSKQLLS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04531 266 FunFam BHLH transcription factor 165 227 - -
Rops2g04531 266 Gene3D - 161 226 IPR036638 GO:0046983
Rops2g04531 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 260 IPR045843 GO:0003700|GO:0006355
Rops2g04531 266 Pfam Helix-loop-helix DNA-binding domain 172 211 IPR011598 GO:0046983
Rops2g04531 266 CDD bHLH_AtIND_like 163 219 - -
Rops2g04531 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 221 IPR036638 GO:0046983
Rops2g04531 266 SMART finulus 168 217 IPR011598 GO:0046983
Rops2g04531 266 Coils Coil 201 221 - -
Rops2g04531 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04531 Rops-Chr2 82757891 82758691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04531 70 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 62.424 3.96e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g04531 HLH 6.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04531 - - gmx:100812308 272.322