Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04526 ATGATGTTCAATAGTATTATTTCTCATGGTTCTTCTCATGCAGAGCCTCGTGGACAAGATAATTGCAATAATGCAAACATTCAAACCCAAGTCAGCCGTCATCTATCATCTGAAGCGCTACAAAGAGTGCGCCCTTCTCCAAGTTCCTTCAGTATTGAAAGTGATCAAAGGTTCCCATATAGGCTTTCTGGGTCAAATATCAATCTCCCTCCAGAGAATAATGGTCGCAGTGCTGGTGTTTTCTTTCATGAACCCAGTGGATCATTGGGATTGAGTGTTTCTTCTTCAAGTTCCCTTACTAGAAGTTCTCTAAGGTTTCCAAATAGGCTTTATGGATCAAGTGTTCTTCATCATCAAGGGACTAGTGGTAGCGTCCCTCAAAATAACATAAACCCAAGTGCAGAAAATGTAGAGGATATCAATCTGGATTTGTCATTAGGCTTACCCCTAAATCCAACTGGATCTCAAAATCAGAGTGGAAATACTTCTTATGTGAATGAAATTAACAACAGGACCAATGGCAGCATCTCAACCACTATGGATTTACCATCCATGAAAAGACCTATAGATAGAGAATTATTAGCTGGTGAAAGTTCCAGCATGGGTGAAGCTAGAATGGCCAAAAGACAGGCTCCAGGTGTTGCTTCTGATGTCTTTGCCAATGACAACATGAACACATCACTTATGCATATTGGTCCTATAAACAATCACCCAAGAGGCTTTCAGAGTCCAATTAGTCACCGCCCTGCAATATCAGCTGAGATGCATGGGGCACATAATGATAGCTTTCGTAATAATATTAATATGCAGATTATTTCTGCTACTACTCCCCAAGCATCTGTACATACAAACAGATTTTCAGACGGTTATACAAGAGGTGTACAAGCTCCCTTACACAGCCATGCACCTTTGTTTTCACAAATGAACAGTCCTGCTTTGTATAGCTCCTCAGAAAGAGCCCATGCCCCTAATTTTGGTCGAGTCCAGCGTGGTTCTCACCAGAGAACTGGAAACTTCCTTGGGAATCTCCCCAACAATTTGGAACTAAATGGTTATTTCACTGGAAATCTTAACATTTCCAATGCAACTGCAACGGTCTCCCAATTTTATGGGCATCAACAAGAACGTCCCGTGCAGATTGTATCTGCCACTATGGGTAATCTCGGTGCACGGCAAGGAATTGTTTTATTTGGGGAAAGTAGTCGAGGAGGCCCATCATCGGCTTTAGGAATGGACCCTACCATACCAATAAGAAATCTTACACCAGGGAACCAGCTGAGTTCAGTGGCAGCACCTGATATTCAAGCTGGTGGTGGCAATGCAGAACAACCACCTCATCCTCTTAGGCCATTGGCTCATCGTGATCATGAAAGGAGAGCCATGATGGGTCCTCGGGTTCAAACTGCCATGGAACATCTCCGCAATGGTGGCACAATACGGATTGAGGATTTGATGTCCATCGACTACTCAGTTGTAGTACATATGATTGAGGCACTGGTTGCTGCAGCAAGGCAAGATGAGAACCCGGAACCGGGACTGTCGGAAGAAGTGATCATGAAGAACATTAGACATGAAAATTTCGAGCTTGTCAGTGAGGAGACTCCAGAAAATAAAGAAGCATGCTGCATTTGTCAGGAGGAATATGTCAACGGAGAAGAAATTGGGAGGGTGGATTGTGGGCATATATTTCACATTGACTGCATCAAACAATGGCTTATGCAGAAGAACGTATGCCCCATCTGCAGACGAAAGGCATTACTCTTGATTGATGAAGAAGATGAGGATGATTAA 1791 0.4316 MMFNSIISHGSSHAEPRGQDNCNNANIQTQVSRHLSSEALQRVRPSPSSFSIESDQRFPYRLSGSNINLPPENNGRSAGVFFHEPSGSLGLSVSSSSSLTRSSLRFPNRLYGSSVLHHQGTSGSVPQNNINPSAENVEDINLDLSLGLPLNPTGSQNQSGNTSYVNEINNRTNGSISTTMDLPSMKRPIDRELLAGESSSMGEARMAKRQAPGVASDVFANDNMNTSLMHIGPINNHPRGFQSPISHRPAISAEMHGAHNDSFRNNINMQIISATTPQASVHTNRFSDGYTRGVQAPLHSHAPLFSQMNSPALYSSSERAHAPNFGRVQRGSHQRTGNFLGNLPNNLELNGYFTGNLNISNATATVSQFYGHQQERPVQIVSATMGNLGARQGIVLFGESSRGGPSSALGMDPTIPIRNLTPGNQLSSVAAPDIQAGGGNAEQPPHPLRPLAHRDHERRAMMGPRVQTAMEHLRNGGTIRIEDLMSIDYSVVVHMIEALVAAARQDENPEPGLSEEVIMKNIRHENFELVSEETPENKEACCICQEEYVNGEEIGRVDCGHIFHIDCIKQWLMQKNVCPICRRKALLLIDEEDEDD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04526 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 586 IPR013083 -
Rops2g04526 596 Pfam Ring finger domain 540 582 IPR001841 -
Rops2g04526 596 SUPERFAMILY RING/U-box 525 587 - -
Rops2g04526 596 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 135 586 IPR045191 GO:0061630
Rops2g04526 596 SMART ring_2 541 581 IPR001841 -
Rops2g04526 596 ProSiteProfiles Zinc finger RING-type profile. 541 582 IPR001841 -
Rops2g04526 596 MobiDBLite consensus disorder prediction 1 23 - -
Rops2g04526 596 MobiDBLite consensus disorder prediction 36 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04526 Rops-Chr2 82612057 82615668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04526 466 586 C3H Transcription Factor Family AT2G15530 39.437 4.40e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04526 - - aprc:113858181 161.77