Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops2g04507 | ATGTGGGATCTCAATGACTCACCTGATCAGAGAAAGGACGCGGAATCCGAAGGGTGTTCTTCTCTCAAGACTTCCATCGATGGGGATGACGATAAAGGCAAGAGGGTTGGATCCGTTTCCAATTCAAGTTCTTCTGATGTGGTCATCGAGGACGGATCAGAAGAAGAAGGTGGTGAAAAGGAGGGTAACAGGACTATGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTCTGTGACCCAAGATGAAGAATACAAGGACGGTGACCAAACACCTGTTACTAGACAATTTTTTCCTGTGGAGGAGCCTGATATGGCCGTTGCTTCGGGTGGTGGAAGCACCACCTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGTCAATCAGAAGCACTTGGTTCTGGAAAATCAGTGGAAGTTTCACAGCCCATGAAGAAGAGTAGAAGAGGACCAAGGTCGAGGAGTTCACAGTATAGAGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGCGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCCTATGATAGAGCGGCCATTAAGTTCCGAGGAGTGGAGGCAGACATAAACTTCATCATAGAAGACTATGAAGAAGACTTGAAGCAGATGAGCAATCTGACCAAGGAAGAGTTTGTGCACGTACTTCGCCGTCAAAGCACTGGATTTCCAAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGGAAAAAGTATGTTTATCTGGGTCTGTTTGACACCGAGATGGAAGCCGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAACGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGAGAATGAGCTCAATTCTGAATCCGCAGGTAACGCTGCAGATCACAATCTTGATTTAAGTTTGGGCAATTCGAGTACAAAACCCACCAATAGTCAAGCGTTTGGGAATGACACCACAAATGCTGCAACTCATAACCAGCACCTGTCATCTGAATCTAATTGGCGGAATGGGGGAAACAAGCCTAAGCTCGTGAATATACTACCAAAACCATGTCATAGAAGCAACAATGAAGGGCATGGAAGGGATGTGCATGGGGAGAGTGAAGCATTGCGCATGCTAAGTCAAACTCACCTTCATTCTTCAGCCTCTAACGATATGCATAGATATGGTCCCTACAGGTCTCCTGGAGAGTCTCAAATGCTTCACAATTTTGCACACATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCTATGGAGGCCGTGTTGGAAGTGATCTTTCATTATCAACAAGCGATCAACAACAACAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCCTGA | 1533 | 0.4599 | MWDLNDSPDQRKDAESEGCSSLKTSIDGDDDKGKRVGSVSNSSSSDVVIEDGSEEEGGEKEGNRTMKKRSSKIFGFSVTQDEEYKDGDQTPVTRQFFPVEEPDMAVASGGGSTTFPRAHWVGVKFCQSEALGSGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFIIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEMEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESAGNAADHNLDLSLGNSSTKPTNSQAFGNDTTNAATHNQHLSSESNWRNGGNKPKLVNILPKPCHRSNNEGHGRDVHGESEALRMLSQTHLHSSASNDMHRYGPYRSPGESQMLHNFAHIHPPNFHFPSSSYGGRVGSDLSLSTSDQQQQQQWQSGPPHYLATAAASSGFPPQIRPSSQGWLQKNGFHTLMRPS* | 511 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops2g04507 | 510 | MobiDBLite | consensus disorder prediction | 136 | 156 | - | - | |
Rops2g04507 | 510 | PRINTS | Ethylene responsive element binding protein signature | 249 | 260 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | PRINTS | Ethylene responsive element binding protein signature | 287 | 307 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | CDD | AP2 | 247 | 307 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | ProSiteProfiles | AP2/ERF domain profile. | 156 | 212 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | FunFam | AP2-like ethylene-responsive transcription factor | 247 | 307 | - | - | |
Rops2g04507 | 510 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 91 | 403 | - | - | |
Rops2g04507 | 510 | ProSiteProfiles | AP2/ERF domain profile. | 248 | 305 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | SUPERFAMILY | DNA-binding domain | 247 | 307 | IPR016177 | GO:0003677 | |
Rops2g04507 | 510 | CDD | AP2 | 156 | 211 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | MobiDBLite | consensus disorder prediction | 450 | 474 | - | - | |
Rops2g04507 | 510 | MobiDBLite | consensus disorder prediction | 319 | 371 | - | - | |
Rops2g04507 | 510 | SMART | rav1_2 | 156 | 218 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | SMART | rav1_2 | 248 | 311 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Rops2g04507 | 510 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Rops2g04507 | 510 | Gene3D | AP2/ERF domain | 247 | 306 | IPR036955 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | Gene3D | AP2/ERF domain | 155 | 213 | IPR036955 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | SUPERFAMILY | DNA-binding domain | 155 | 212 | IPR016177 | GO:0003677 | |
Rops2g04507 | 510 | Pfam | AP2 domain | 247 | 296 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | Pfam | AP2 domain | 156 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
Rops2g04507 | 510 | MobiDBLite | consensus disorder prediction | 319 | 368 | - | - | |
Rops2g04507 | 510 | FunFam | AP2-like ethylene-responsive transcription factor | 155 | 214 | - | - | |
Rops2g04507 | 510 | MobiDBLite | consensus disorder prediction | 444 | 474 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops2g04507 | Rops-Chr2 | 82376517 | 82380204 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops2g04507 | 1 | 382 | AP2-EREBP Transcription Factor Family | AT4G36920 | 62.814 | 3.30e-134 | 394 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Rops2g04507 | AP2 | 1.1e-09 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops2g04507 | K09284 | - | gmx:100792442 | 799.275 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops2g04507 | 2 | 82376517 | 82380204 | Rops2g04507 | 2 | 82376517 | 82380204 | ECH | |
Rops1g01802 | 1 | 37212811 | 37216297 | Rops2g04507 | 2 | 82376517 | 82380204 | PCT |