Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04507 ATGTGGGATCTCAATGACTCACCTGATCAGAGAAAGGACGCGGAATCCGAAGGGTGTTCTTCTCTCAAGACTTCCATCGATGGGGATGACGATAAAGGCAAGAGGGTTGGATCCGTTTCCAATTCAAGTTCTTCTGATGTGGTCATCGAGGACGGATCAGAAGAAGAAGGTGGTGAAAAGGAGGGTAACAGGACTATGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTCTGTGACCCAAGATGAAGAATACAAGGACGGTGACCAAACACCTGTTACTAGACAATTTTTTCCTGTGGAGGAGCCTGATATGGCCGTTGCTTCGGGTGGTGGAAGCACCACCTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGTCAATCAGAAGCACTTGGTTCTGGAAAATCAGTGGAAGTTTCACAGCCCATGAAGAAGAGTAGAAGAGGACCAAGGTCGAGGAGTTCACAGTATAGAGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGCGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCCTATGATAGAGCGGCCATTAAGTTCCGAGGAGTGGAGGCAGACATAAACTTCATCATAGAAGACTATGAAGAAGACTTGAAGCAGATGAGCAATCTGACCAAGGAAGAGTTTGTGCACGTACTTCGCCGTCAAAGCACTGGATTTCCAAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGGAAAAAGTATGTTTATCTGGGTCTGTTTGACACCGAGATGGAAGCCGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAACGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGAGAATGAGCTCAATTCTGAATCCGCAGGTAACGCTGCAGATCACAATCTTGATTTAAGTTTGGGCAATTCGAGTACAAAACCCACCAATAGTCAAGCGTTTGGGAATGACACCACAAATGCTGCAACTCATAACCAGCACCTGTCATCTGAATCTAATTGGCGGAATGGGGGAAACAAGCCTAAGCTCGTGAATATACTACCAAAACCATGTCATAGAAGCAACAATGAAGGGCATGGAAGGGATGTGCATGGGGAGAGTGAAGCATTGCGCATGCTAAGTCAAACTCACCTTCATTCTTCAGCCTCTAACGATATGCATAGATATGGTCCCTACAGGTCTCCTGGAGAGTCTCAAATGCTTCACAATTTTGCACACATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCTATGGAGGCCGTGTTGGAAGTGATCTTTCATTATCAACAAGCGATCAACAACAACAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCCTGA 1533 0.4599 MWDLNDSPDQRKDAESEGCSSLKTSIDGDDDKGKRVGSVSNSSSSDVVIEDGSEEEGGEKEGNRTMKKRSSKIFGFSVTQDEEYKDGDQTPVTRQFFPVEEPDMAVASGGGSTTFPRAHWVGVKFCQSEALGSGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFIIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEMEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESAGNAADHNLDLSLGNSSTKPTNSQAFGNDTTNAATHNQHLSSESNWRNGGNKPKLVNILPKPCHRSNNEGHGRDVHGESEALRMLSQTHLHSSASNDMHRYGPYRSPGESQMLHNFAHIHPPNFHFPSSSYGGRVGSDLSLSTSDQQQQQQWQSGPPHYLATAAASSGFPPQIRPSSQGWLQKNGFHTLMRPS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04507 510 MobiDBLite consensus disorder prediction 136 156 - -
Rops2g04507 510 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 FunFam AP2-like ethylene-responsive transcription factor 247 307 - -
Rops2g04507 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 403 - -
Rops2g04507 510 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 SUPERFAMILY DNA-binding domain 247 307 IPR016177 GO:0003677
Rops2g04507 510 CDD AP2 156 211 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 MobiDBLite consensus disorder prediction 450 474 - -
Rops2g04507 510 MobiDBLite consensus disorder prediction 319 371 - -
Rops2g04507 510 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 MobiDBLite consensus disorder prediction 1 36 - -
Rops2g04507 510 MobiDBLite consensus disorder prediction 1 68 - -
Rops2g04507 510 Gene3D AP2/ERF domain 247 306 IPR036955 GO:0003700|GO:0006355
Rops2g04507 510 Gene3D AP2/ERF domain 155 213 IPR036955 GO:0003700|GO:0006355
Rops2g04507 510 SUPERFAMILY DNA-binding domain 155 212 IPR016177 GO:0003677
Rops2g04507 510 Pfam AP2 domain 247 296 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Rops2g04507 510 MobiDBLite consensus disorder prediction 319 368 - -
Rops2g04507 510 FunFam AP2-like ethylene-responsive transcription factor 155 214 - -
Rops2g04507 510 MobiDBLite consensus disorder prediction 444 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04507 Rops-Chr2 82376517 82380204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04507 1 382 AP2-EREBP Transcription Factor Family AT4G36920 62.814 3.30e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops2g04507 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04507 K09284 - gmx:100792442 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04507 2 82376517 82380204 Rops2g04507 2 82376517 82380204 ECH
Rops1g01802 1 37212811 37216297 Rops2g04507 2 82376517 82380204 PCT