Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04506 ATGGCTGGTGAAGGAAGAGCCACAGTGAAGAGAGGAAAAGAAGGAGAAACAAAGTACAAAGGAATCAGAATGAGAAAGTGGGGAAAGTGGGTCGCTGAGATTCGAGAACCCAATAAACGTTCTCGTATTTGGCTCGGTTCTTATTCCACTCCCGTTGCGGCGGCGCGTGCATACGACACCGCCGTTTTCTATCTCCGGGGACCATCCGCTCGTCTTAACTTCCCGGACCTTCTTGCCAGAGAAGGTGTCGCCGCCGCCGCTTCCGACATGTCGGCGGCTTCTATTAGGAAGAAAGCCATAGAGGTCGGTGCCAGAGTTGACGCCCTCCACCGTCAGCATCCACGTGCTTCCGCCGCAGCAGAATTTGCGGAACGGGTCGACCTTAATAAATTACCCGAACCCGATAATTCGGATTCTGACTGGGACAGGGATTAG 435 0.5356 MAGEGRATVKRGKEGETKYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLAREGVAAAASDMSAASIRKKAIEVGARVDALHRQHPRASAAAEFAERVDLNKLPEPDNSDSDWDRD* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04506 144 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Rops2g04506 144 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Rops2g04506 144 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Rops2g04506 144 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Rops2g04506 144 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Rops2g04506 144 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Rops2g04506 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 139 - -
Rops2g04506 144 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Rops2g04506 144 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Rops2g04506 144 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Rops2g04506 144 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04506 Rops-Chr2 82315463 82316192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04506 19 142 AP2-EREBP Transcription Factor Family AT2G23340 63.889 5.06e-54 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g04506 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04506 K09286 - gmx:100784157 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04506 2 82315463 82316192 Rops2g04506 2 82315463 82316192 ECH
Rops1g01805 1 37270432 37271410 Rops2g04506 2 82315463 82316192 PCT