Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04498 ATGGCCGTCGAGCTCATGATGGGTTATAGGAACGAGAGTTACACAGCCAAAGCTGAAGAGAATGCTGTTCAAGAAGCTGCTTCTGGTTTGGAGAGTGTGGAGAAGCTTATCAGATTGCTGTCTCAAACTCGTCAACAATACAACTCTTCTTCATCTTCAGCTTCAAATCCAAACCCCAACATGGAGATCGAGATGGATTGCAGAGCTGTAGCAGACGTCGCCGTTTCGAAGTTCAAGAGGGTGATTTCGCTTCTGGGTCGAACCAGAACTGGTCACGCTCGTTTCAGAAGAGCACCTTTGGCTCCACCTAACCAAACCCCACTGAAACAAACGCAAAATCAACCTTCTGAGCCTAAAGTTTTTAACGCCACCCCTTTGCAGCAGATCCCACCCACCACGCTTCACCACCATCACCAAATCGAACACCCTAAAATTGGAACTATTGAGAGGAAGGAATCTTCCAAGACCATAAATTTCTCTTATTCTACTACTCCGAATTCCTTTATAACGTCCCTCACCGGCGACACCGACACCAAGCAGCCATCTTCGTTGTCTCCGCCGCAGCCGGCGGCTGGGGCTTTTCAGATCACGAATCTGTCTCAGGTGTCGTCGGCGGGGAAGCCTCCACTTTCTTCCTCTTCGTTGAAAAGGAAGTGTAGTTCTGAGAATTTGGGTTCTGGAAAGTGTGGCAGCTCCTCTAGCCGTTGTCATTGTTCCAAAAAGAGCAGGAAATTGAGGTTGAAGAGAGTGGTGAGGGTACCAGCTATAAGCTTGAAGATGGCTGATATTCCACCTGATGATTATTCATGGAGGAAGTATGGACAGAAACCTATTAAAGGATCCCCTCATCCAAGGGGTTACTACAAGTGCAGTAGCGTGAGAGGGTGTCCAGCGAGAAAACATGTAGAGCGTGCTTTAGATGATCCTTCTATGCTGGTAGTGACTTATGAAGGCGAGCACAATCACTCCCTCTCTGCAGCTGATGCTAGTAATCTCATTCTAGAATCATCTTAA 1014 0.4753 MAVELMMGYRNESYTAKAEENAVQEAASGLESVEKLIRLLSQTRQQYNSSSSSASNPNPNMEIEMDCRAVADVAVSKFKRVISLLGRTRTGHARFRRAPLAPPNQTPLKQTQNQPSEPKVFNATPLQQIPPTTLHHHHQIEHPKIGTIERKESSKTINFSYSTTPNSFITSLTGDTDTKQPSSLSPPQPAAGAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKSRKLRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSAADASNLILESS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04498 337 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g04498 337 Pfam Plant zinc cluster domain 216 262 IPR018872 -
Rops2g04498 337 Pfam WRKY DNA -binding domain 266 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g04498 337 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 329 IPR044810 GO:0003700
Rops2g04498 337 MobiDBLite consensus disorder prediction 97 152 - -
Rops2g04498 337 MobiDBLite consensus disorder prediction 104 134 - -
Rops2g04498 337 FunFam WRKY transcription factor 65 248 325 - -
Rops2g04498 337 MobiDBLite consensus disorder prediction 170 236 - -
Rops2g04498 337 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g04498 337 Gene3D WRKY domain 249 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g04498 337 MobiDBLite consensus disorder prediction 170 237 - -
Rops2g04498 337 SUPERFAMILY WRKY DNA-binding domain 261 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g04498 337 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04498 Rops-Chr2 82213964 82215650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04498 1 322 WRKY Transcription Factor Family AT2G24570 43.284 1.03e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops2g04498 WRKY 3.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04498 - - qsu:112030051 415.231