Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04469 ATGGCCATGTCTCCAAACCCTCAAGAGCCACTCTTAGTTGACTCAGTTCAAGAAGAAGAAACAGCTTATGATTCCTCGGAGAAAATCGTGGTGGTTGGAATCGATGAGTCCGATAACGAAGGTAAATGGGGTGAGCTGCCACCATTCTCATTGAAGAAGCTATGGCTCTTCACGGGTCCTGGTTTTCTGATGAGTATAGCGTTTCTGGATCCTGGGAACATAGAGGGGGACCTTCAAGCTGGTGCCATTGCAGGGTACTCACTGTTGTGGCTTTTAATGTGGGCCACTGCCATGGGGCTTTTGATTCAGTTATTGTCTGCAAGGCTTGGTGTGGCCACTGGGAAGCACTTGGCTGAACTGTGCAGGGAAGAGTACCCCACATGGGCAAGGATTGTGCTTTGGGTTATGGCAGAGGTTGCTCTCATTGGTTCTGATATTCAAGAGGTTATTGGGAGTGCTATTGCTATTAGGATTCTGAGTAATGGGTTTGTGCCCCTTTGGGCTGGGGTCGTCATTACAGCTCTTGATTGTTTTATCTTTCTCTTTCTTGAAAATTATGGTGTGAGGAAATTAGAAGCTTTTTTTGCTGTTCTCATTGGTATAATGGCACTTGCGTTTGCATGGATGTTTGGTGAAGCAAAGCCAAGTGGCAAGGAGCTTCTTCTTGGCATTTTGGTTCCAAAACTCAGCTCCAGAACTATACAGCAGGCTGTTGGAGTTGTGGGCTGTCTTATAATGCCTCACAATGTATTCTTGCACTCTGCTCTTGTTCAATCAAGGCAGGTTGACCACAGCAACAAAGGCCGAGTTCAAGAAGCTATTAACTATTACTCTATTGAGTCCACCCTTGCCCTTATAGTCTCCTTTGTCATTAATATATTTGTCACGACTGTGTTTGCTAAGGGGTTTTATGGTTCTGAACTAGCAAATAGCATTGGTCTTGCAAATGCAGGACAGTATCTTCAGGAGACGTATGGGGGTGGACTATTTCCAATATTATATATATGGGCTATTGGGTTGTTAGCAGCCGGCCAAAGTAGCACTATAACTGGTACTTATGCTGGACAATTTATCATGGGGGGTTTTCTAAATTTAAGGTTAAAAAAATGGATAAGGGCAGTAATTACCCGAAGTTTTGCAATAATCCCAACCATGATAGTGGCTCTTATATTTGATAACTCTGAGGAATCACTGGATGTTCTGAATGAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCACTCATTCCCTTGCTCTGTCTGGTGTCAAAGGAGCACATAATGGGAACTTTCAGAATTGGCACTATTCTCAAGATTATTTCTTGGCTTGTGGCTGCTCTGGTGACAGTGATTAATGGCTATCTCTTGGTGGAATTCTTCTCAGCTGAAGTGAATGGAGTAATAGTTGGCGCTGTAGTGTGTGCACTAACTGCTGCATATGTTGCATTCATGATATATCTTATTTGGAGGGTCATTACCTTTTCACCTTGGCAAAGCCTAACACAATCAAAGACAATTGCTCACTCAGAGAGTTGA 1542 0.4351 MAMSPNPQEPLLVDSVQEEETAYDSSEKIVVVGIDESDNEGKWGELPPFSLKKLWLFTGPGFLMSIAFLDPGNIEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPTWARIVLWVMAEVALIGSDIQEVIGSAIAIRILSNGFVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIGIMALAFAWMFGEAKPSGKELLLGILVPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDHSNKGRVQEAINYYSIESTLALIVSFVINIFVTTVFAKGFYGSELANSIGLANAGQYLQETYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRAVITRSFAIIPTMIVALIFDNSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEHIMGTFRIGTILKIISWLVAALVTVINGYLLVEFFSAEVNGVIVGAVVCALTAAYVAFMIYLIWRVITFSPWQSLTQSKTIAHSES* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04469 513 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 47 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 Pfam Natural resistance-associated macrophage protein 74 436 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 NCBIfam Nramp family divalent metal transporter 59 428 - -
Rops2g04469 513 PRINTS Natural resistance-associated macrophage protein signature 188 209 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 PRINTS Natural resistance-associated macrophage protein signature 344 363 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 PRINTS Natural resistance-associated macrophage protein signature 372 389 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 PRINTS Natural resistance-associated macrophage protein signature 133 159 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 PRINTS Natural resistance-associated macrophage protein signature 237 260 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 PRINTS Natural resistance-associated macrophage protein signature 163 182 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 PRINTS Natural resistance-associated macrophage protein signature 406 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 Hamap Divalent metal cation transporter MntH [mntH]. 37 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops2g04469 513 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 52 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04469 Rops-Chr2 81703717 81707574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04469 8 506 Inorganic Solute Cotransporters AT2G23150 77.291 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04469 K21398 - gmx:100812381 888.256