Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04426 ATGGGTGCTCCCAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTGAAAGCTGGAGTAGTCAAACATGGGGCAGGGAAATGGCGCACTATACTCACAGACCCCGAGTTCAGTGCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAAGCAAAGCTTGCCCTTAAAAAGAACCTTCCAGCTCCCAAATTTGACAATAATCATTTGGCCTTGAGTACTGCAGTTCAACGTGAAGAAGTTCTCGATGCTAAGCCCCTAGGAGTTTCTGGCGGAACATTGCAATCTCCTAATTCAAAAGAACAGATATCAAGGTTGGGGGATAGTCATCTATTAGAGGCCATTGTCAATATGAAGGAGCCAAAGGGTTCAGACAGGGCTGCCATTGCTTCTTACATGGAGGAAGAATATCAGTGTCCACCAAACCTCAGAAAGTTACTATCAGCAAAACTGAAGCATATGGTGGCGAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGAATTATGCCTGGTTCAACATTAGCTGAGAAAAGACGATGCTCTTCCTTGATGCTTGTGGAAGGGAGGCCCAAGGATTCAACAGAAGCAGAGAAGAGTGATGATATCAACATCCTTTCAAAATCCCAAATTGATGCAGAGCTATCAAAAGTGAAGGGCATGACAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTGGCAGAGGCAGAAGCTGCCATTGCACAGGCTGAGGCAGCAGCAAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGTAGTTTCTATCAGTTCTTTTGGTTAGCCTCTAGTGAATTTGTGCAGATGGTGTGGACTTCAACTTCATCATCAGCAGAGTTGGCTCGAGATAATAATTCTGCTGCTGTGCTTCCTGCCTGTTTTCCATAA 1017 0.4562 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPAPKFDNNHLALSTAVQREEVLDAKPLGVSGGTLQSPNSKEQISRLGDSHLLEAIVNMKEPKGSDRAAIASYMEEEYQCPPNLRKLLSAKLKHMVASGKIIKEKHKYRIMPGSTLAEKRRCSSLMLVEGRPKDSTEAEKSDDINILSKSQIDAELSKVKGMTAQEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHICSFYQFFWLASSEFVQMVWTSTSSSAELARDNNSAAVLPACFP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04426 338 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Rops2g04426 338 Gene3D - 2 59 - -
Rops2g04426 338 SUPERFAMILY "Winged helix" DNA-binding domain 126 196 IPR036390 -
Rops2g04426 338 SMART h15plus2 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops2g04426 338 Gene3D - 124 195 IPR036388 -
Rops2g04426 338 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops2g04426 338 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Rops2g04426 338 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Rops2g04426 338 CDD SANT_TRF 6 57 - -
Rops2g04426 338 Coils Coil 243 280 - -
Rops2g04426 338 FunFam Telomere repeat-binding factor 1 2 58 - -
Rops2g04426 338 Pfam linker histone H1 and H5 family 128 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops2g04426 338 SMART sant 4 59 IPR001005 -
Rops2g04426 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Rops2g04426 338 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04426 Rops-Chr2 80935588 80943149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04426 1 292 Single Myb Histone (SMH) Gene Family AT5G67580 54.915 7.93e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops2g04426 Linker_histone 5.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04426 K09422 - gmx:100779583 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01892 1 38589125 38593362 Rops2g04426 2 80935588 80943149 PCT