Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04418 ATGTTTCAGGCTCCTTCTAAGAGGGAAGCGGTTGCTGGGTTGGAGGGTGGTGGCGACGGCCAGATTCTAGATCTGGACACGGCGGTGAGAGATGGGGTTTTGGGTGGTGTGGATGCCGGAGTTGTGGGAACTGGGGTTGGTGAAAAATTGGATCTTGGGAAGATGATTGAAGAGTTGGACCTGTCTGAAGTTCCCTCTGTGTTTATTTGCCCAATTTCCCTTGAGCCAATGCAAGACCCTGTGACCCTTGGCACTGGCCAGACCTATGAGAGGTCCAACATTTTGAAATGGTTCAGTTTGGGGCACTTCACTTGCCCCACCACTATGCAAGAGCTATGGGATGATTCCATCACTCCAAATACCACACTCTACCGTTTGATGCACACTTGGTTTTCTCAGAAGTACTTGCTGATGAAGAAGAGATCAGAAGATGTGCAGGGGAGGGTCTCTGAACTTGTGGAGACACTGAAGAAGGTGAAGGGTCAAGCTCGTGTTCAGGCTCTAAAGGAGCTTCATCAAGTGGTGGCTTCTCATGCCACTGCCCGTAAGGCTTTGATTGTTGAAGGTGGAGTCTCTGTGATGTCATCTTTGCTTGGTCCCTTTACTTCCCACGCTGTTGGCTCTGAGGTCATTGGTGTTCTTGTGAGTTTGACTCTTGAATCTGAATCCAAAAGGAATCTAATGCAGCCTGCGAAAATTTCATTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACTAAAATCAACTGTGCCCGGTTAATTGAGTCCCTGATTGATGAGAAGGATTTCCGGTCGTTTGAGATTTTCAAAAGTCATAGCCTTTTGATTGGGTTGATGAGACTTGTGAAGGACAAGAGACACACAAATGGAATCTGTGCTGGATTAAGCCTTCTCAAAAGATTATGTTTGCATACAGAAGTTAAGAATTTGCTAGTAAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGCCTGATTGTTTGGAATTGGCACTTTCCATTCTAGATGCAATGGCATCTAGCCCTGAAGGCAGAATGGCTTTGAAGGATTGTTCTAATACCATACCCATTATGGTGAAACTGTTGATGAGGGTCTCAGAGAACTGCACCCAATATGCATTGTCAATACTGTGGTCTGTGTGCAAGCTTGCTCCTGAGGAGTGCTCGTTGATTGCTGTGGATGCAGGACTTGCTGCAAAACTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTATATTAAAACAACAGTCTTCTGAGCTTTTGAAGTTGTGTAGTTTAAATTATTCAGATACAATCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCAATGA 1350 0.4504 MFQAPSKREAVAGLEGGGDGQILDLDTAVRDGVLGGVDAGVVGTGVGEKLDLGKMIEELDLSEVPSVFICPISLEPMQDPVTLGTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLMHTWFSQKYLLMKKRSEDVQGRVSELVETLKKVKGQARVQALKELHQVVASHATARKALIVEGGVSVMSSLLGPFTSHAVGSEVIGVLVSLTLESESKRNLMQPAKISLMVDILNEGSIETKINCARLIESLIDEKDFRSFEIFKSHSLLIGLMRLVKDKRHTNGICAGLSLLKRLCLHTEVKNLLVSIGAVSQLVELLSGLEPDCLELALSILDAMASSPEGRMALKDCSNTIPIMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVDAGLAAKLLLVIQSGCNPILKQQSSELLKLCSLNYSDTIFISKCKLTRTIQ* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04418 449 PANTHER WDSAM1 PROTEIN 60 435 IPR045185 GO:0061630
Rops2g04418 449 SUPERFAMILY RING/U-box 58 134 - -
Rops2g04418 449 Gene3D - 143 264 IPR011989 -
Rops2g04418 449 Pfam U-box domain 64 134 IPR003613 GO:0004842|GO:0016567
Rops2g04418 449 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
Rops2g04418 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 142 IPR013083 -
Rops2g04418 449 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
Rops2g04418 449 SUPERFAMILY ARM repeat 147 433 IPR016024 -
Rops2g04418 449 CDD RING-Ubox_PUB 65 115 IPR045210 -
Rops2g04418 449 Gene3D - 265 437 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04418 Rops-Chr2 80763474 80766579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04418 1 449 U-box Gene Family AT3G49810 71.715 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04418 - - gmx:100779827 756.903