LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g04418	ATGTTTCAGGCTCCTTCTAAGAGGGAAGCGGTTGCTGGGTTGGAGGGTGGTGGCGACGGCCAGATTCTAGATCTGGACACGGCGGTGAGAGATGGGGTTTTGGGTGGTGTGGATGCCGGAGTTGTGGGAACTGGGGTTGGTGAAAAATTGGATCTTGGGAAGATGATTGAAGAGTTGGACCTGTCTGAAGTTCCCTCTGTGTTTATTTGCCCAATTTCCCTTGAGCCAATGCAAGACCCTGTGACCCTTGGCACTGGCCAGACCTATGAGAGGTCCAACATTTTGAAATGGTTCAGTTTGGGGCACTTCACTTGCCCCACCACTATGCAAGAGCTATGGGATGATTCCATCACTCCAAATACCACACTCTACCGTTTGATGCACACTTGGTTTTCTCAGAAGTACTTGCTGATGAAGAAGAGATCAGAAGATGTGCAGGGGAGGGTCTCTGAACTTGTGGAGACACTGAAGAAGGTGAAGGGTCAAGCTCGTGTTCAGGCTCTAAAGGAGCTTCATCAAGTGGTGGCTTCTCATGCCACTGCCCGTAAGGCTTTGATTGTTGAAGGTGGAGTCTCTGTGATGTCATCTTTGCTTGGTCCCTTTACTTCCCACGCTGTTGGCTCTGAGGTCATTGGTGTTCTTGTGAGTTTGACTCTTGAATCTGAATCCAAAAGGAATCTAATGCAGCCTGCGAAAATTTCATTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACTAAAATCAACTGTGCCCGGTTAATTGAGTCCCTGATTGATGAGAAGGATTTCCGGTCGTTTGAGATTTTCAAAAGTCATAGCCTTTTGATTGGGTTGATGAGACTTGTGAAGGACAAGAGACACACAAATGGAATCTGTGCTGGATTAAGCCTTCTCAAAAGATTATGTTTGCATACAGAAGTTAAGAATTTGCTAGTAAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGCCTGATTGTTTGGAATTGGCACTTTCCATTCTAGATGCAATGGCATCTAGCCCTGAAGGCAGAATGGCTTTGAAGGATTGTTCTAATACCATACCCATTATGGTGAAACTGTTGATGAGGGTCTCAGAGAACTGCACCCAATATGCATTGTCAATACTGTGGTCTGTGTGCAAGCTTGCTCCTGAGGAGTGCTCGTTGATTGCTGTGGATGCAGGACTTGCTGCAAAACTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTATATTAAAACAACAGTCTTCTGAGCTTTTGAAGTTGTGTAGTTTAAATTATTCAGATACAATCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCAATGA	1350	0.4504	MFQAPSKREAVAGLEGGGDGQILDLDTAVRDGVLGGVDAGVVGTGVGEKLDLGKMIEELDLSEVPSVFICPISLEPMQDPVTLGTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLMHTWFSQKYLLMKKRSEDVQGRVSELVETLKKVKGQARVQALKELHQVVASHATARKALIVEGGVSVMSSLLGPFTSHAVGSEVIGVLVSLTLESESKRNLMQPAKISLMVDILNEGSIETKINCARLIESLIDEKDFRSFEIFKSHSLLIGLMRLVKDKRHTNGICAGLSLLKRLCLHTEVKNLLVSIGAVSQLVELLSGLEPDCLELALSILDAMASSPEGRMALKDCSNTIPIMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVDAGLAAKLLLVIQSGCNPILKQQSSELLKLCSLNYSDTIFISKCKLTRTIQ*	450

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g04418	449	PANTHER	WDSAM1 PROTEIN	60	435	IPR045185	GO:0061630
	Rops2g04418	449	SUPERFAMILY	RING/U-box	58	134	-	-
	Rops2g04418	449	Gene3D	-	143	264	IPR011989	-
	Rops2g04418	449	Pfam	U-box domain	64	134	IPR003613	GO:0004842\|GO:0016567
	Rops2g04418	449	ProSiteProfiles	U-box domain profile.	63	137	IPR003613	GO:0004842\|GO:0016567
	Rops2g04418	449	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	53	142	IPR013083	-
	Rops2g04418	449	SMART	Ubox_2	67	130	IPR003613	GO:0004842\|GO:0016567
	Rops2g04418	449	SUPERFAMILY	ARM repeat	147	433	IPR016024	-
	Rops2g04418	449	CDD	RING-Ubox_PUB	65	115	IPR045210	-
	Rops2g04418	449	Gene3D	-	265	437	IPR011989	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g04418	Rops-Chr2	80763474	80766579	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g04418	1	449	U-box Gene Family	AT3G49810	71.715	0.0	640

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g04418	-		-	gmx:100779827	756.903

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