LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g04413	ATGAATATAGGCGTTCCTTCACACACTCATCAGTCCCAGCCTTCATCTTCTGTTGCTGAAGTAGTTCCAGCAAGCTTTTACCACCCTTCTTCTCTTAATAACTATGGCTTTTATTATGGACTTGAAGCTGAAAATGTTGGATTATATTCAACCCTCCCTATCATGCCCCTCAAATCTGATGGTTCCCTCTATGGAATGGAAGCTCTGAACAGGTCACAAACACAAGCAATGGCTACTACTTCAGCACCAAAACTGGAGAATTTTTTAGGAAGCCAAGCAATGGGGACCCCTCACTACGCATGTAGTGCCACAGAAACAATGGCTCTAAGCTTAGACAGTACGTTTTACAACCAACCCTCACGCCGTGATCCAAACAACCCAAATTACCAAAATCATGTCCAACACATCAACAACCAGCAACAACAGCAAGAGCTTCAAGCCCTACACTTGTCCTATTACTCCAACTTGAGAAACCATGATGTGATGTTAGAAGGGTCCAAGCAAAGTCAAACTTCAGATAGCAATCTCCAGGTCCGAAACATGGCTGAGGATGGAGTTCCTGGTCTTGAGAACTGGGTAAGGAACTTCCCAGCTAGCCATGCACAAGAGTCAAAGATGATGGTTCCTGTTGTGGAGGAAAATGAAGGTGAATCCGGTTCCATTGGATCAATGGCATATGGTGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAGTCAAGCTGTGTTACTAGCTCACAGCGTACACCACCTGCAGTCATTGATTCTGTTGTCATGGATACAAAGAAAAGGGGACCTGAAAAGTTTGACCAGAAGCAAATTGTTCATAGGAAATCCATCGATACTTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGCTGCAAGAAAGAGGGGCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGACAAGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACCAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGGGTGGCTGGAAACAAAGATCTATATCTGGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTAACCAACTTTGATATAACAAAATATGATGTGGAAAAAATTATGGCAAGCAGTAACCTTCTCAGCAGTGAACTTGCTAGGCGGAATAAAGAGGTGGATGGTGGAACTCAGTATGTTGATCACAAGCCTTCTGCATATGAAGACACTCAAGAAGCCATTTTAATGCAGAAGAGCTGTGAAGGCCAATCAGATCAGTGGAAGATGGTTCTGTGTCGATCCTCCCAACAACTTGACCAGAATCCACCAAGAATTGAGACTGAGAGAGCTCATCAATCATTCTCGGTGTCTTTAGATAACATGTTTCATCAAGAAGTGGAAGAATCAAGTAAGATGAGAACTCATGTGTCAAATCCTTCTTCATTGGCAACAAGTTTGAACAGCTCAAGAGAAGGTAGCCCAGATAAGACAAACTTGCCAATGCTCTCTGGAGTGCCTTCAACAGCGTCCAAACTGTTGGCTACCAATCCAAATAATAACGTGAATTCTTGGGATCCATCACCCCATCTGAGGCCTGCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATGGATAG	1902	0.4369	MNIGVPSHTHQSQPSSSVAEVVPASFYHPSSLNNYGFYYGLEAENVGLYSTLPIMPLKSDGSLYGMEALNRSQTQAMATTSAPKLENFLGSQAMGTPHYACSATETMALSLDSTFYNQPSRRDPNNPNYQNHVQHINNQQQQQELQALHLSYYSNLRNHDVMLEGSKQSQTSDSNLQVRNMAEDGVPGLENWVRNFPASHAQESKMMVPVVEENEGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSQRTPPAVIDSVVMDTKKRGPEKFDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSSELARRNKEVDGGTQYVDHKPSAYEDTQEAILMQKSCEGQSDQWKMVLCRSSQQLDQNPPRIETERAHQSFSVSLDNMFHQEVEESSKMRTHVSNPSSLATSLNSSREGSPDKTNLPMLSGVPSTASKLLATNPNNNVNSWDPSPHLRPALSLPQMPVFAAWTDG*	634

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops2g04413	633	CDD	AP2	290	357	IPR001471	GO:0003700\|GO:0006355
Rops2g04413	633	CDD	AP2	392	453	IPR001471	GO:0003700\|GO:0006355
Rops2g04413	633	FunFam	AP2-like ethylene-responsive transcription factor	392	453	-	-
Rops2g04413	633	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	79	533	-	-
Rops2g04413	633	MobiDBLite	consensus disorder prediction	552	611	-	-
Rops2g04413	633	Coils	Coil	358	378	-	-
Rops2g04413	633	ProSiteProfiles	AP2/ERF domain profile.	393	451	IPR001471	GO:0003700\|GO:0006355
Rops2g04413	633	ProSiteProfiles	AP2/ERF domain profile.	291	357	IPR001471	GO:0003700\|GO:0006355
Rops2g04413	633	SUPERFAMILY	DNA-binding domain	392	452	IPR016177	GO:0003677
Rops2g04413	633	SUPERFAMILY	DNA-binding domain	290	359	IPR016177	GO:0003677

Showing 1 to 10 of 20 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g04413	Rops-Chr2	80663622	80667753	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g04413	374	632	AP2-EREBP Transcription Factor Family	AT4G37750	25.574	9.14e-17	82.0

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Rops2g04413		AP2	3.5e-13	CL0081

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g04413	K09285		-	gmx:100787611	978.393

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops1g01906	1	38854081	38858012	Rops2g04413	2	80663622	80667753	PCT

Showing 1 to 1 of 1 entries

Previous1Next