Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04413 ATGAATATAGGCGTTCCTTCACACACTCATCAGTCCCAGCCTTCATCTTCTGTTGCTGAAGTAGTTCCAGCAAGCTTTTACCACCCTTCTTCTCTTAATAACTATGGCTTTTATTATGGACTTGAAGCTGAAAATGTTGGATTATATTCAACCCTCCCTATCATGCCCCTCAAATCTGATGGTTCCCTCTATGGAATGGAAGCTCTGAACAGGTCACAAACACAAGCAATGGCTACTACTTCAGCACCAAAACTGGAGAATTTTTTAGGAAGCCAAGCAATGGGGACCCCTCACTACGCATGTAGTGCCACAGAAACAATGGCTCTAAGCTTAGACAGTACGTTTTACAACCAACCCTCACGCCGTGATCCAAACAACCCAAATTACCAAAATCATGTCCAACACATCAACAACCAGCAACAACAGCAAGAGCTTCAAGCCCTACACTTGTCCTATTACTCCAACTTGAGAAACCATGATGTGATGTTAGAAGGGTCCAAGCAAAGTCAAACTTCAGATAGCAATCTCCAGGTCCGAAACATGGCTGAGGATGGAGTTCCTGGTCTTGAGAACTGGGTAAGGAACTTCCCAGCTAGCCATGCACAAGAGTCAAAGATGATGGTTCCTGTTGTGGAGGAAAATGAAGGTGAATCCGGTTCCATTGGATCAATGGCATATGGTGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAGTCAAGCTGTGTTACTAGCTCACAGCGTACACCACCTGCAGTCATTGATTCTGTTGTCATGGATACAAAGAAAAGGGGACCTGAAAAGTTTGACCAGAAGCAAATTGTTCATAGGAAATCCATCGATACTTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGCTGCAAGAAAGAGGGGCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGACAAGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACCAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGGGTGGCTGGAAACAAAGATCTATATCTGGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTAACCAACTTTGATATAACAAAATATGATGTGGAAAAAATTATGGCAAGCAGTAACCTTCTCAGCAGTGAACTTGCTAGGCGGAATAAAGAGGTGGATGGTGGAACTCAGTATGTTGATCACAAGCCTTCTGCATATGAAGACACTCAAGAAGCCATTTTAATGCAGAAGAGCTGTGAAGGCCAATCAGATCAGTGGAAGATGGTTCTGTGTCGATCCTCCCAACAACTTGACCAGAATCCACCAAGAATTGAGACTGAGAGAGCTCATCAATCATTCTCGGTGTCTTTAGATAACATGTTTCATCAAGAAGTGGAAGAATCAAGTAAGATGAGAACTCATGTGTCAAATCCTTCTTCATTGGCAACAAGTTTGAACAGCTCAAGAGAAGGTAGCCCAGATAAGACAAACTTGCCAATGCTCTCTGGAGTGCCTTCAACAGCGTCCAAACTGTTGGCTACCAATCCAAATAATAACGTGAATTCTTGGGATCCATCACCCCATCTGAGGCCTGCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATGGATAG 1902 0.4369 MNIGVPSHTHQSQPSSSVAEVVPASFYHPSSLNNYGFYYGLEAENVGLYSTLPIMPLKSDGSLYGMEALNRSQTQAMATTSAPKLENFLGSQAMGTPHYACSATETMALSLDSTFYNQPSRRDPNNPNYQNHVQHINNQQQQQELQALHLSYYSNLRNHDVMLEGSKQSQTSDSNLQVRNMAEDGVPGLENWVRNFPASHAQESKMMVPVVEENEGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSQRTPPAVIDSVVMDTKKRGPEKFDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSSELARRNKEVDGGTQYVDHKPSAYEDTQEAILMQKSCEGQSDQWKMVLCRSSQQLDQNPPRIETERAHQSFSVSLDNMFHQEVEESSKMRTHVSNPSSLATSLNSSREGSPDKTNLPMLSGVPSTASKLLATNPNNNVNSWDPSPHLRPALSLPQMPVFAAWTDG* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04413 633 CDD AP2 290 357 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 CDD AP2 392 453 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 FunFam AP2-like ethylene-responsive transcription factor 392 453 - -
Rops2g04413 633 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 533 - -
Rops2g04413 633 MobiDBLite consensus disorder prediction 552 611 - -
Rops2g04413 633 Coils Coil 358 378 - -
Rops2g04413 633 ProSiteProfiles AP2/ERF domain profile. 393 451 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 ProSiteProfiles AP2/ERF domain profile. 291 357 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 SUPERFAMILY DNA-binding domain 392 452 IPR016177 GO:0003677
Rops2g04413 633 SUPERFAMILY DNA-binding domain 290 359 IPR016177 GO:0003677
Rops2g04413 633 MobiDBLite consensus disorder prediction 558 611 - -
Rops2g04413 633 PRINTS Ethylene responsive element binding protein signature 433 453 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 PRINTS Ethylene responsive element binding protein signature 292 303 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 Gene3D AP2/ERF domain 290 359 IPR036955 GO:0003700|GO:0006355
Rops2g04413 633 Gene3D AP2/ERF domain 393 453 IPR036955 GO:0003700|GO:0006355
Rops2g04413 633 FunFam AP2-like ethylene-responsive transcription factor ANT 290 359 - -
Rops2g04413 633 Pfam AP2 domain 291 349 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 Pfam AP2 domain 394 443 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 SMART rav1_2 393 457 IPR001471 GO:0003700|GO:0006355
Rops2g04413 633 SMART rav1_2 291 363 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04413 Rops-Chr2 80663622 80667753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04413 374 632 AP2-EREBP Transcription Factor Family AT4G37750 25.574 9.14e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops2g04413 AP2 3.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04413 K09285 - gmx:100787611 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01906 1 38854081 38858012 Rops2g04413 2 80663622 80667753 PCT