Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04409 ATGGGAAGGGCTCCTTGTTGTGACAAAGCCAACGTCAAGAGAGGTCCATGGTCGCCAGAAGAAGACGCCAAACTCAAGGCTTATATCGAGAAGCACGGCACCGGTGGTAACTGGATAGCCCTGCCCCAGAAAATAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCTATTATAGCAGCACAATTACCAGGGCGAACAGATAATGATATAAAGAACTACTGGAACACTAAGCTGAAGAAGAAGCTCTTAGGAAAGCAAAGAAAGGAGCAACAGGCTCAAGCTCGCCAAGTTTGGAGCCTAAAGCGAGAGATCAATAGAGAAAGTGAAAATTTGATGTTACCTGTGGGAGTTACGAGCCAAACTTCCTATTGGCCCAACCCAGTTGCAAATACTTCCATTCAAGACCATGACCTCAACAATCAAACATCACCCCAAATAAACTTGCTAACCAAACTAGGGGGAGTTAGATTTTCCGATAATTATCAACAACCATACACAAACTTAGTCACTGCCAACATGGATTCACAATACTCATGTGACATTTCCTTACCACAAGACCAGCTATATCCATCCACAATGAACATGATAACCCCGGAAGGGATGGTTGCTGCAAACATATTTCAAGGGTTTGGGAACTTTCCCAGTGATTTGACTGAGTTGGAATGTGTAAACTCACAACAAGTAGATGGATCAATGCAAGTTTTTTATGGAATGGAGTCCATGGACGTGGCCAATGGCAGTAGCACGAACACGACTTCAACAAAAAGCTCAAGTTGGGGAGATATAAGCTCTTTGGTTTACTCACCTTTGGTTTCTGACTATTAA 849 0.4287 MGRAPCCDKANVKRGPWSPEEDAKLKAYIEKHGTGGNWIALPQKIEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQQAQARQVWSLKREINRESENLMLPVGVTSQTSYWPNPVANTSIQDHDLNNQTSPQINLLTKLGGVRFSDNYQQPYTNLVTANMDSQYSCDISLPQDQLYPSTMNMITPEGMVAANIFQGFGNFPSDLTELECVNSQQVDGSMQVFYGMESMDVANGSSTNTTSTKSSSWGDISSLVYSPLVSDY* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04409 282 SMART sant 13 88 IPR001005 -
Rops2g04409 282 Gene3D - 7 46 - -
Rops2g04409 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 90 IPR017930 -
Rops2g04409 282 PANTHER OS09G0431300 PROTEIN 46 254 - -
Rops2g04409 282 Pfam Myb-like DNA-binding domain 46 84 IPR001005 -
Rops2g04409 282 SUPERFAMILY Homeodomain-like 11 82 IPR009057 -
Rops2g04409 282 Gene3D - 47 118 - -
Rops2g04409 282 CDD SANT 16 84 IPR001005 -
Rops2g04409 282 ProSiteProfiles Myb-like domain profile. 9 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04409 Rops-Chr2 80571919 80573101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04409 1 276 MYB Transcription Factor Family AT3G49690 41.009 1.64e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g04409 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04409 K09422 - gmx:100792374 328.176