Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04403 ATGGGTCTCGATCAGGATGGTCGTAACTCAGGCCTTCAGCTTATTCTAGGGTTAGCTTTGACTCTAACACCACAAGATACCATTACTCAGTCACCATCTAACAAGGTTGGTGGTGGTGACCATCTTAATGTTAGACCAAGGCCAAGGCCATGTTTAACAAGTAACTCTGAGGCTGAGCCTTCATTAACGTTGGGTCTTTCCGGTGAGAGTTACCCACAACAGGTGGTCAAAGTCACCAAAAATAAGATGAATATAGGGCACAGTGAGGACCCTCTTGACTTTTCTACACAGACTTCACCTCATAGTGCTATTTCCTCTTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATCTTAGCAGTGAAGAAGTGGAGGCAGCAGAGATAGAGAGGGTTTCTTCAAGAGTCAGTGATGAAGAAGAAGACGGCACCACTGCTAGGAAAAAGCTCAGGCTTACCAAAGAACAATCTTCTATGCTTGAGGAAAGCTTCAAACAACATAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAAGCAGTTAAATCTTCGGCCTCGACAAGTTGAGGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAACAGACGGAGGTGGACTGCGAGTTGCTAAAGAAATGTTGTGAAACATTGACAGACGAAAACAGGAGGTTACAAAAGGAGTTGCAAGAGCTGAAGACACTGAAACTAGCACAGCCCTTGTATGTGCCCATGCCTGCAGCCACCCTCACCATGTGCCCTTCTTGTGAGAGACTCGCTGGTGCTTCCAATAAGGGATACCTCTACAACCCCTTCACCAATCCCTCTGCAACATGTTGA 840 0.469 MGLDQDGRNSGLQLILGLALTLTPQDTITQSPSNKVGGGDHLNVRPRPRPCLTSNSEAEPSLTLGLSGESYPQQVVKVTKNKMNIGHSEDPLDFSTQTSPHSAISSFSSGRVKRERDLSSEEVEAAEIERVSSRVSDEEEDGTTARKKLRLTKEQSSMLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKTLKLAQPLYVPMPAATLTMCPSCERLAGASNKGYLYNPFTNPSATC* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04403 279 FunFam Homeobox-leucine zipper protein 18 131 207 - -
Rops2g04403 279 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Rops2g04403 279 CDD homeodomain 146 203 IPR001356 GO:0003677
Rops2g04403 279 Gene3D - 150 200 - -
Rops2g04403 279 MobiDBLite consensus disorder prediction 27 66 - -
Rops2g04403 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 18 264 - -
Rops2g04403 279 SMART HOX_1 144 206 IPR001356 GO:0003677
Rops2g04403 279 MobiDBLite consensus disorder prediction 90 109 - -
Rops2g04403 279 Coils Coil 208 238 - -
Rops2g04403 279 SUPERFAMILY Homeodomain-like 136 203 IPR009057 -
Rops2g04403 279 MobiDBLite consensus disorder prediction 110 147 - -
Rops2g04403 279 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Rops2g04403 279 MobiDBLite consensus disorder prediction 87 147 - -
Rops2g04403 279 Pfam Homeodomain 146 200 IPR001356 GO:0003677
Rops2g04403 279 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Rops2g04403 279 Pfam Homeobox associated leucine zipper 202 235 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04403 Rops-Chr2 80406560 80408156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04403 1 279 Homeobox Transcription Factor Family AT4G37790 57.143 9.26e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops2g04403 Homeodomain 6.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04403 K09338 - gmx:100795135 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01914 1 39031824 39033383 Rops2g04403 2 80406560 80408156 PCT