Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04391 ATGATGCAAGTTTCGTCCACCAAGTACTTGCCTGAACTCGGAATGGAGGACCCCACTTTGTTTCATCAATACCTTGCATTCCAGCTAGATAACGTTGACTTGGAATCTTTCTCTGCGTCCCCGGAAAGCTGTTCCTCGCATAAGCGCTTAAATTCCGAAAGCACACAAAACTCATTCCCCGTTGAAAGTCCTCCTGATCAGTCTATTGCCCCAGCAAGACCAATGAAGCAGCTCAAGACTATGAGTACTTGGAGTCCTTATGGCTGTGACTTGAAGGCTCCCAACGCTTCTTCCTCTACATCATCCCAAATCATTTCTTTTGACCACTCCAATGCTTCTTCAGTTGCTTCCCAACAATTCTACAACATGGATGCCAATGAGAAACCAAAAATCGAGATGGGGTGTGGTGAAAACTTGGATTTTGCAGCTGCGTTTTCTCAAGGTGCCTATGATAAACTAGAGAACAAGGCTGCCACGATGCCCCCTAGAAATCCAACACAGGCTAGAGATCATGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGATTCATTGCTCTTTCGGCTATCCTTCCTGGACTCAAGAAGATGGACAAGGCTTCTGTGTTGGAAGATGCTATCAAGTATCTGAAACAACTAAAGGAACGTGTTAAGATACTGGAGGAACAAGTGGCTGAGAAAACAGTTGAAACAGCAGTGTTTGTGAAGAGATCTATTCTCTTCTCTGACGATGATAGCTCCTCTTCTGATGAAAACTCTGACCGGTCACTCCCTGAAATCGAAGCAAGGGTTTCTGGGAAAGACGTACTCATCAGAATCCACTGTGAAAAACACAGTGGGAGAGCGGTGCCTGCAATACTCAACGAATTAGAAAAACATTATCTCACAGCTCAGAGTAGCAGCTTCTTGCCATTTGGGAATAACACTCTTGACATAACTATTGTTGCTCAGATGAACAAGGAATACTGTTTGAAACCAAAGGATCTAATAAGAGGCATAAGCCAGGCTTTGGGGCAGCTCATTTGA 1032 0.4428 MMQVSSTKYLPELGMEDPTLFHQYLAFQLDNVDLESFSASPESCSSHKRLNSESTQNSFPVESPPDQSIAPARPMKQLKTMSTWSPYGCDLKAPNASSSTSSQIISFDHSNASSVASQQFYNMDANEKPKIEMGCGENLDFAAAFSQGAYDKLENKAATMPPRNPTQARDHVIAERKRREKLSQRFIALSAILPGLKKMDKASVLEDAIKYLKQLKERVKILEEQVAEKTVETAVFVKRSILFSDDDSSSSDENSDRSLPEIEARVSGKDVLIRIHCEKHSGRAVPAILNELEKHYLTAQSSSFLPFGNNTLDITIVAQMNKEYCLKPKDLIRGISQALGQLI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04391 343 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Rops2g04391 343 MobiDBLite consensus disorder prediction 38 72 - -
Rops2g04391 343 Coils Coil 205 232 - -
Rops2g04391 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 236 IPR036638 GO:0046983
Rops2g04391 343 PANTHER BHLH TRANSCRIPTION FACTOR 33 339 - -
Rops2g04391 343 CDD bHLH_AtNAI1_like 168 240 - -
Rops2g04391 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Rops2g04391 343 MobiDBLite consensus disorder prediction 38 64 - -
Rops2g04391 343 Gene3D - 161 230 IPR036638 GO:0046983
Rops2g04391 343 SMART finulus 172 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04391 Rops-Chr2 80165190 80167040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04391 2 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 39.205 1.06e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g04391 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04391 - - gmx:100798011 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04391 2 80165190 80167040 Rops2g04391 2 80165190 80167040 ECH
Rops1g01927 1 39296621 39298322 Rops2g04391 2 80165190 80167040 PCT