Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04390 ATGACAACATCAATGGAGGAATCGTGGACTGATTGGTTGTGTGATATGGAACCAGATGATTACAGTTTCATCAATCAATCAGAAATTAACGTGGTTGATGGAAGTTTACCAATCCAACATGATATAACCGCTGCGTTAAAGGAGGAGAAGCCGCAAAAATCTCTCTCTACGGAGAGTCACTGTTCTTATGCCACCTTCAACACTGAAATCACCAGAACCATGAGCAATTCTTCAGTGACTGAAAGTAGCTTAGAGAGGCCTTCCAAGATACTCAAGACTTCAAACTCTTCCATGACCGAGAAGATGGTTTCTTCTCCCTGCTCTTACATTCTTTCGTTTCACAACGTGAATCCACCACCAATAAAGCATGAACCAGCCTTGAAGCCAAAAACCAAAGTAGTGAATTCAAAGAATGAACTGAGACGCGTTACTCATGAGAGCAAGAAGACGGGCTCATTTGCCAGATCTACTCATCACACACCAGATCACATAATTGCTGAGAGAATGAGAAGAGAAAAAATTAGCCAGCACTTCATAGCTCTTTCAGCCCTTATTCCAGACCTGAAAAAGATGGACAAGGCGTCTGTGTTGGGGGACGCTATAAAGTACGTGAAACAGCTGAAGGAGCAAGTGAAAGTGCTGGAGGAGCAGAAGAACAAAAGGAAAAGCGTAGAATCGATGGTGTTTGTGAAGAAATCTCAGCTCTCTACGGATGAAGAAGATGTCTCAGACACCTCGTCAAATTCCTTTAATGGAAACTCCAATGGTCCCTCAAAAATAAATCTGTCACTGCCAGAAGTTGAAGCAAGGGTGTCAGAGAAGAAAGTGCTGATTCGAATCCTATGCGAGAAAGAAAAGGCAGTGCTGGCGAACATATTAAGAGAGATAGAGAAACTTCATCTCTCGGTCATCAATGGCAGTTCCTTCTCCTTCGGTTCCTCAATTCTTGTCATCACAATCCTAGCCGAGATGGAGGAGGAGTTTAACGTGAGCGTGAAGAAACTAGCTAGTAACCTCAGAGTGGGACTGATGCAATTTATGTAA 1044 0.4301 MTTSMEESWTDWLCDMEPDDYSFINQSEINVVDGSLPIQHDITAALKEEKPQKSLSTESHCSYATFNTEITRTMSNSSVTESSLERPSKILKTSNSSMTEKMVSSPCSYILSFHNVNPPPIKHEPALKPKTKVVNSKNELRRVTHESKKTGSFARSTHHTPDHIIAERMRREKISQHFIALSALIPDLKKMDKASVLGDAIKYVKQLKEQVKVLEEQKNKRKSVESMVFVKKSQLSTDEEDVSDTSSNSFNGNSNGPSKINLSLPEVEARVSEKKVLIRILCEKEKAVLANILREIEKLHLSVINGSSFSFGSSILVITILAEMEEEFNVSVKKLASNLRVGLMQFM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04390 347 Pfam Helix-loop-helix DNA-binding domain 163 208 IPR011598 GO:0046983
Rops2g04390 347 PANTHER BHLH TRANSCRIPTION FACTOR 52 346 - -
Rops2g04390 347 MobiDBLite consensus disorder prediction 77 97 - -
Rops2g04390 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 221 IPR036638 GO:0046983
Rops2g04390 347 SMART finulus 164 213 IPR011598 GO:0046983
Rops2g04390 347 Coils Coil 197 227 - -
Rops2g04390 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Rops2g04390 347 Gene3D - 157 231 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04390 Rops-Chr2 80080180 80082100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04390 86 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.553 1.56e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g04390 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04390 - - gmx:100803386 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04390 2 80080180 80082100 Rops2g04390 2 80080180 80082100 ECH
Rops1g01928 1 39300129 39302236 Rops2g04390 2 80080180 80082100 PCT