Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04389 ATGGAGGAATTAAACACACCAATGGAATCATCAGCAACTGACTGGTTATCTGATTTGGAAATGAATGACTACAATTTATTTCCTGAGGAATGTCCCCTGAACTTGCTTGATGTTGATGAAGAAGAGTTTCTTTCACATGACATAGCTAGTGCCCTGCAGGAAACTTTATCTTCAGAAACTTTGAGCAACACATTCACCGATGAAACCAGTTTTGACTTTGAGAGACCTACCAAGCTGCTCAAAACACATGACAGTGTTAGTAACTCATCCAGCATCACTGAAAACTTTTCACCAAAACTCTCCCCATCATCGTCTATTTCCTCTTTTCAATCTCAGATTCTGTCTTTTGACAACCCAAATTCACCCACCGCCCAGTTTTATGGGTTGGACTGTACCTTAAACTCAAAACAGAACGAGATGGTGTCAGTGTCACCACCACCACTGCTTCAAGTGGGAAATAGGCATTTATCCACACAAACCCAAAAAGGGTCCTACAAAAATCGAAACTTGGAAACAAAAACCTCACATGGTAAGAGATCTCCATCTCACGCTCAGGATCACATCATGGCCGAGAGAAAGAGAAGGGAAAAGCTCAGCCAAAGTTTCATAGCTCTTGCTGCTCTCGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTATTAGCGGAAGCTATCAAACACGTGAAAGAGCTCAAAGAGCGGTTGACAGTGCTAGAAGAAGAAAACAAGAAAACAAGGGCAGAGTCGGTGGTGGTTCCGAACAGACCAGAGCTCTCTGGAGTTGACGATTCTTCCTCATGTGATGAGAGCATTGAAGCTGCTGGTGTCAGTGAATCACGCTTCCAAGTTGAGGCAAGAGTGTCAGGGAAGGAGATGCTGATTCGGATCCACTGCCAGAAGCAAAAGGGCCTTTTGGCCAAAATTCTTGAGGAGATTCAAAGTTATCACCTATCAGTTAGCAATAGCAGTGTCTTACCATTTGGGGATTCTATCCTCGACATTACCATAATTGCGCAGATGGGTGAAGGATTCAACTGGACCACTGAAAAACTTGTCAAGAACCTACGCATGGCGACATTGAAGTTTATGTCATAA 1095 0.4356 MEELNTPMESSATDWLSDLEMNDYNLFPEECPLNLLDVDEEEFLSHDIASALQETLSSETLSNTFTDETSFDFERPTKLLKTHDSVSNSSSITENFSPKLSPSSSISSFQSQILSFDNPNSPTAQFYGLDCTLNSKQNEMVSVSPPPLLQVGNRHLSTQTQKGSYKNRNLETKTSHGKRSPSHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLAEAIKHVKELKERLTVLEEENKKTRAESVVVPNRPELSGVDDSSSCDESIEAAGVSESRFQVEARVSGKEMLIRIHCQKQKGLLAKILEEIQSYHLSVSNSSVLPFGDSILDITIIAQMGEGFNWTTEKLVKNLRMATLKFMS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04389 364 Coils Coil 221 248 - -
Rops2g04389 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 252 IPR036638 GO:0046983
Rops2g04389 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Rops2g04389 364 MobiDBLite consensus disorder prediction 169 193 - -
Rops2g04389 364 MobiDBLite consensus disorder prediction 156 193 - -
Rops2g04389 364 Pfam Helix-loop-helix DNA-binding domain 186 231 IPR011598 GO:0046983
Rops2g04389 364 Gene3D - 172 248 IPR036638 GO:0046983
Rops2g04389 364 SMART finulus 188 237 IPR011598 GO:0046983
Rops2g04389 364 PANTHER BHLH TRANSCRIPTION FACTOR 53 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04389 Rops-Chr2 80057842 80060349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04389 12 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.122 7.92e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g04389 HLH 8.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04389 - - gmx:100788128 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04389 2 80057842 80060349 Rops2g04389 2 80057842 80060349 ECH