Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04388 ATGTGGAATCCTAGAGAACACCAAGAAGAAGATGACTCGTGGGAAGTCAGAGCCTTTGCAGAAGACACCAGAAACATCATGGGTACCACTTGGCCTCCAAGGTCCTACACCTGCACCTTCTGCAGAAGAGAGTTCCGTTCAGCTCAAGCACTTGGTGGCCACATGAACGTGCACCGCCGTGACCGTGCACGCCTCCACCAAACGCACCCTCCACCATCTTCATCTCCATTCATTAACATCCCACCTCAAGAGCTTGTTGCAAATGGTGGGTTGTGCCTTCTCTACCGTTTGCCAAGCCCTAATGTTCCACTATCCACTCATAGCCACATGACTAATGCTCCGAATGCATGTGGTGAATCACCTTCCACTGTTCTCTCTGTCTCATCCTACCCATCAAACAACTTGATGATGATGCCAACTTGTTCCCCTTCCTTTGATTTCCCAGATAGAGCTTCAGGGATCAGTGGTTTTTCTTCTCACTCCTGCAGCTCTAGCAAAGTGGAAGAACCCAAAGCCTCTTCCACCATTCATGGCCACCAAGAGGAGCTTGATCTAGAGCTCCGTTTGGGGCATAGTTCAACACCATCTTGA 591 0.4975 MWNPREHQEEDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQTHPPPSSSPFINIPPQELVANGGLCLLYRLPSPNVPLSTHSHMTNAPNACGESPSTVLSVSSYPSNNLMMMPTCSPSFDFPDRASGISGFSSHSCSSSKVEEPKASSTIHGHQEELDLELRLGHSSTPS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04388 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Rops2g04388 196 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Rops2g04388 196 MobiDBLite consensus disorder prediction 172 188 - -
Rops2g04388 196 Gene3D Classic Zinc Finger 27 73 - -
Rops2g04388 196 MobiDBLite consensus disorder prediction 158 196 - -
Rops2g04388 196 SMART c2h2final6 36 58 IPR013087 -
Rops2g04388 196 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Rops2g04388 196 PANTHER OS07G0101800 PROTEIN 8 192 - -
Rops2g04388 196 Pfam C2H2-type zinc finger 36 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04388 Rops-Chr2 79997847 79998437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04388 1 191 C2H2 Transcription Factor Family AT4G17810 41.000 1.82e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g04388 zf-C2H2_6 3.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04388 - - gmx:100818142 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04388 2 79997847 79998437 Rops2g04388 2 79997847 79998437 ECH
Rops1g01938 1 39400679 39401380 Rops2g04388 2 79997847 79998437 PCT