Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04386 ATGGATTCCCGACCAGCGCCACCACCACCCACCTCGTACGCTCCGACCAACAACAACAACAACTCATCTTCCTCCCCCGTGATCAGCCCTAATTCCGCCACCACCAACACCATCATGGCCCCCGCCACCGCACGATTCCCCTTTGGCTCGGCGGCGCCACCGCCTCCTCCTCCTCCATCTGAGCCCTTCAACACCGCCACCACCTATGATGGGCCTTCCTCGCCCACGGGCCTGGCGAAGAAAAAGAGGGGCCGGCCCAGGAAGTACTCGCCGGATGGTAACATTGCCCTGGGCCTGGCCCCCACACAACACGTGTCCCCTTCCGCCGGTGGCTCCGCCGAAACTCCGGCGAAGAAACACCGTGGAAGGCCTCCGGGCTCCGGGAAGAAGCAGTTGGATGCGCTCGGTGTCGGTGGGGTTGGATTTACTCCCCATGTAATATTGGTGGATTCTGGCGAGGACATTACAGCAAAAATTATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCCAATGGTGCAATCTGCAATGTCACCCTTCGACAGCCAGCATTGTCTGGTGGTACTGTAACATATGAGGGCCGATTTGAGATTATATCTTTATCAGGTGCTTTGCAGCTATCTGAAAATAACGGTGAACGTAGCAGAACAGGTGGTTTGAATGTGTCTCTTGCAGGGTCTGACGGACGAGTTCTGGGTGGTGGAGTTGCTGGAATGCTAACTGCAGCATCACCTGTACAGGTCATTGTGGGTAGCTTTATTGCGGATGGGAAAAAGTCAAGCTCGAATATCCTGAAATCTGGGCCTTCTTCAGCACCAACCTCCCAAATGTTAACCTTTGGTGCACCTTTGACTCCAACTAGTCCTACCTCTCAAGGGCCATCAACTGAGTCCTCGGAGGACAATGATCATAGTCCTTTCAATAGGGGGCCTGGGCTCTACAACAATAATGCTAGCCAGCCTGTTCATAATATGCAGATGTACCATCATCCACTATGGGCTGGCCAAACTCATCAATGA 1032 0.5388 MDSRPAPPPPTSYAPTNNNNNSSSSPVISPNSATTNTIMAPATARFPFGSAAPPPPPPPSEPFNTATTYDGPSSPTGLAKKKRGRPRKYSPDGNIALGLAPTQHVSPSAGGSAETPAKKHRGRPPGSGKKQLDALGVGGVGFTPHVILVDSGEDITAKIMAFSQQGPRTVCILSANGAICNVTLRQPALSGGTVTYEGRFEIISLSGALQLSENNGERSRTGGLNVSLAGSDGRVLGGGVAGMLTAASPVQVIVGSFIADGKKSSSNILKSGPSSAPTSQMLTFGAPLTPTSPTSQGPSTESSEDNDHSPFNRGPGLYNNNASQPVHNMQMYHHPLWAGQTHQ* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04386 343 ProSiteProfiles PPC domain profile profile. 138 278 IPR005175 -
Rops2g04386 343 MobiDBLite consensus disorder prediction 265 305 - -
Rops2g04386 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 319 IPR039605 GO:0003680
Rops2g04386 343 MobiDBLite consensus disorder prediction 1 132 - -
Rops2g04386 343 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Rops2g04386 343 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Rops2g04386 343 MobiDBLite consensus disorder prediction 265 324 - -
Rops2g04386 343 MobiDBLite consensus disorder prediction 15 41 - -
Rops2g04386 343 CDD DUF296 143 257 IPR005175 -
Rops2g04386 343 Gene3D - 144 269 - -
Rops2g04386 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 258 - -
Rops2g04386 343 MobiDBLite consensus disorder prediction 48 63 - -
Rops2g04386 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 257 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04386 Rops-Chr2 79903456 79908734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04386 79 325 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 56.420 4.67e-80 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04386 - - gmx:100789717 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01940 1 39469695 39473423 Rops2g04386 2 79903456 79908734 PCT