Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04379 ATGGGTTGTACGATGAGAGAAAAGCATATCAGAGCGAATCGGAGGCCTCGATCAACGAAACCTGATTTGGATTCTTCCGACAAGGATGCCATATCCAAATCCATAGCGGAATCTGGTCTGAAACCCTTTAAATACAACCTGGGTATCAATGATTCCTCTTCTCAGAACTCAAATCCCAACCCTAATAATGAGGAAACCGGGTGGGGTTACTGCACGGAGGAGCAATTAGAAGAGATCCTTTTGAAAAACTTGGAATTCGTATACAATGAAGCTGTTTCAAAGCTTGTTGCTTTGGGCTATGATGAGGATGTTGCTGTGAAAGCCATTTTGCGAAATGGGCATTGTTATGGTGGTATGGATGTGCTAACAAATATCTTGCATAATTCTTTAGCGTTTTTGAATAGTAATTGTGGTGGTGGGGGTGGAGGTAGTGTTAGTAATAATGGGAATTTGGATGAGACAGAGCCTGTGTTTTCTGATTTGAGGCAATTGGAGGAGTACTCTTTGGCGGGTATGGTGTGTTTATTGCAACAGGTGAGGCCTCATTTGAGTAAAGGTGATGCAATGTGGTGTTTGCTGATGAGTGATCTTCATGTGGGAAGGGCTAGCACTATGGAAATTCCATTGCCTGCTAGTGGGTGTGCTGCACCTGCAACTGTTGATGCTAGTGGAGTTATGGCCCCAGCTCTGTGTAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAAGCTTGGATTTTCCAGTGAATGGGATATTCTCTTGTGGTGCTGACATGAATTTGCAGTTGCAAAGAGATATTGAATTCCCAAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCCTTGTTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCAAATTCTAAACAGTTGCAGGCACAGGCAAAGGCCTTTCCTGGCCGCAGCACTGTGTCTAATTTGGACTCTCCGGCTGTATCTGGGACGGATTCAGTCCCGGTTGATCAGTCTGGAGATTCTCAGAATCTTGATAACCAAGATCCTGTGAACTCGGTGCTGAGTAAATTTCGAGATTTAAATCTTGATGAGAATTTGGAGTTTGTGGCAGAAGATCAGAAGGATGAGGTGATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAACAGGTCAAGGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAAGCTGCTAGGAAGCTGAGCAGTGATATGACTGAACTCAAAATGTTACGGATGGAAAGAGAAGAGACTCAAAAATTGAAGAAAGGAAAACAGGCACTTGAGGACACAACCATGAAGAGACTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTGAGAAGACTAGAAACAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTGGAAGTTGCGAAAAGGGAGAAAAAATGCTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTACAACAGGAGATTTCTGATGAAAAACAGAAGATATTGGAGACACAAGAAGTATTGGTTCAGATTAGACAGAGTATAAAAGAAGCTGAGGTTAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAGGCCTTTGCACTAGTTGAGGAGGAACGCCGTGCTAAGGAAGCAGCTGAGTCTAATAATAAGAGGAAGCTTGAGGCTCTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTACTAAGGCTTGAACAGGAGCTTTCGCGCCTTAAAGCATCTGCTCAGTCTGCTGAATTGCATCACCAATCAAATACTTCACCTATAAGTGATTCTGAGGGTGCAAAGCCACAAAGAGAGACAATTGCTAAGCTGCTTCTAGAATTAGATAATCTGGAGGATTTTTCGGAGAAAGAAGTGAATAGCAACAGAGAATGCATCATATGTATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCATGTGCACATCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAGGGTAAGGCTGCTTGTCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCGTAG 2145 0.4331 MGCTMREKHIRANRRPRSTKPDLDSSDKDAISKSIAESGLKPFKYNLGINDSSSQNSNPNPNNEETGWGYCTEEQLEEILLKNLEFVYNEAVSKLVALGYDEDVAVKAILRNGHCYGGMDVLTNILHNSLAFLNSNCGGGGGGSVSNNGNLDETEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPLPASGCAAPATVDASGVMAPALCRFHGGWGFGNGGSLDFPVNGIFSCGADMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQAKAFPGRSTVSNLDSPAVSGTDSVPVDQSGDSQNLDNQDPVNSVLSKFRDLNLDENLEFVAEDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSSDMTELKMLRMEREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISDEKQKILETQEVLVQIRQSIKEAEVKWKEELKAKEEAFALVEEERRAKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSNTSPISDSEGAKPQRETIAKLLLELDNLEDFSEKEVNSNRECIICMKDEVSVVFLPCAHQVMCASCSDEYGRKGKAACPCCRVQIQQRIRVFGASS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04379 714 ProSiteProfiles Zinc finger RING-type profile. 660 700 IPR001841 -
Rops2g04379 714 Pfam Family of unknown function (DUF6592) 83 203 IPR046527 -
Rops2g04379 714 MobiDBLite consensus disorder prediction 609 631 - -
Rops2g04379 714 MobiDBLite consensus disorder prediction 49 68 - -
Rops2g04379 714 MobiDBLite consensus disorder prediction 311 344 - -
Rops2g04379 714 Coils Coil 549 579 - -
Rops2g04379 714 Coils Coil 588 615 - -
Rops2g04379 714 CDD RING-HC_MIP1-like 655 709 - -
Rops2g04379 714 PANTHER OS05G0141500 PROTEIN 1 709 IPR046934 -
Rops2g04379 714 Pfam Zinc finger, C3HC4 type (RING finger) 657 705 - -
Rops2g04379 714 Coils Coil 440 481 - -
Rops2g04379 714 Coils Coil 496 530 - -
Rops2g04379 714 SMART ring_2 660 699 IPR001841 -
Rops2g04379 714 SUPERFAMILY RING/U-box 644 706 - -
Rops2g04379 714 MobiDBLite consensus disorder prediction 16 30 - -
Rops2g04379 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 711 IPR013083 -
Rops2g04379 714 MobiDBLite consensus disorder prediction 609 628 - -
Rops2g04379 714 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04379 Rops-Chr2 79816763 79822350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04379 646 710 C3H Transcription Factor Family AT1G73950 37.681 3.57e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04379 - - gmx:100777787 1182.16