Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04376 ATGGGAGGGGCATCACTACCACCAGGTTTTCGTTTTCATCCAACTGATGAAGAACTAGTGGGATACTACCTTAAAAGAAAAGTGGAAGGGCTTGAAATTGAGCTTGAAGTTATCCCCGTGATTGATTTTTACAAATTCGATCCATGGGAGTTGCCCGAGAAATCTTTCCTGCCAAAACGAGATTTGGAATGGTTTTTCTTTTATCCACGGGATCGCAAGTACCCAAATGGATCAAGAACAAACAGAGCTACCAAAGCTGGCTACTGGAAAGCCACTGGAAAAGACAGAAAGGTGTCATGCCAGGGTACTCCATCCACTGTCATAGGGTACCGCAAGACCCTTGTTTTCTATCTTGGGAGGGCCCCTTTAGGGGATAGAACCAATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGCCAAGGCTCACCATGTTTTAAGGGTGGATTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGGCACATGATTCAAATGGAGAATACAAGGGCAAGAGGGCTGCAAGCAGTTCCATCAATGGGAGTGACACCACAATGAGATTCTCTAATGAGCCCTTCAGCATCTCTGGTGATGTTTCCTCTCAAGCAAGTCACCTGAATAATGAGAGTCGTTATTCAAGCCCTATTACTTCTCCTTCCGCACACAATGTGGCTCCAATGGCAGGGTTTAACCAAGCTTCCATAGAAACCAATGCTTCAGACTTCTGGATCTCCCCTGATATGATTCTTGATTCTTCAATGGACTACCCTCAAGTACAAGATGCTGTGTCTGAATATTTCCCTAGGCATCACTTACCAAGTACAGTGACACCATTGCAATCACTGGAACATGCAGAAATTTCATCTAGTTTATCCTACTCAAACTTTAATGGGGAGATTGAGTTTGCTGATAATCTCAGTCAAATTGGCTGCATGTCACCTTACTCAAGCCAAGGGAATTTCATGGACTTCTATGGAAATTCAGATGTTCCTTATGAAGGTTCTGATCAAATGAATTCAATCTCATACCTAGATCCCTTCTGA 1047 0.4336 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFYPRDRKYPNGSRTNRATKAGYWKATGKDRKVSCQGTPSTVIGYRKTLVFYLGRAPLGDRTNWVMHEYRLCDDLGQGSPCFKGGFALCRVIKKNEKAHDSNGEYKGKRAASSSINGSDTTMRFSNEPFSISGDVSSQASHLNNESRYSSPITSPSAHNVAPMAGFNQASIETNASDFWISPDMILDSSMDYPQVQDAVSEYFPRHHLPSTVTPLQSLEHAEISSSLSYSNFNGEIEFADNLSQIGCMSPYSSQGNFMDFYGNSDVPYEGSDQMNSISYLDPF* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04376 348 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Rops2g04376 348 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Rops2g04376 348 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Rops2g04376 348 FunFam Nac domain-containing protein 86 15 162 - -
Rops2g04376 348 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Rops2g04376 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 219 - -
Rops2g04376 348 MobiDBLite consensus disorder prediction 165 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04376 Rops-Chr2 79779699 79781967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04376 1 302 NAC Transcription Factor Family AT4G17980 55.592 2.50e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g04376 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04376 - - gmx:100792714 590.497