Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04360 ATGCAAACTCTGGCAGATACCTCATGCACCGATTGTTTTGTTCAATCTCGTGCAGCATATTACCCAAATTCTGAAGTAAATGGCACAGACGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCTACCGTTAATGGTGGGGATGTATCAGCTGCATCTAATCTTTATCGAAATGGAGTTGGCTGTGGTGCTTGTTACCAGGTGAGGTGTACCAACAGTGCTTATTGCTCAGGCAATGGTGTCACTGTAGTTTTAACTGACCAAGGCTCAGGTCATAACACTGACTTCATTCTTAGCCAACGAGCCTTTGGTGGGATGGCTCAGAACTCTAATGCAGCTGCTTCTCTTTTAGCTCTTGGCGTAGTTGATGTTGAATACAGACGTGTTTCATGTAGCTACCCAAACAAAAACATTACAGTTAAGATTGATGAGAGCAGCAACAACCCTCATTACTTGGCATTTGTCATATGGTTTCAACAAGGAAAGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAGAACTTTGTCTGCAAGTTATTGGATCGGAGTCATGGAGCAGTTTGGACCACTACAGCTCCACCTAGTGGACCTTTGTCTTTGAGGATGTTGTTTAGTTCTGAAGAGGGAGAAGAAACATGGGTCGTTCCCGTTAATAACATACCACAAGACTGGAAGGCTGGAGAAACATATGATACAGGGGTACAAGTGGACCTGTAG 717 0.4435 MQTLADTSCTDCFVQSRAAYYPNSEVNGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCTNSAYCSGNGVTVVLTDQGSGHNTDFILSQRAFGGMAQNSNAAASLLALGVVDVEYRRVSCSYPNKNITVKIDESSNNPHYLAFVIWFQQGKRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLSLRMLFSSEEGEETWVVPVNNIPQDWKAGETYDTGVQVDL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04360 238 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Rops2g04360 238 PRINTS Expansin/Lol pI family signature 118 134 IPR007118 GO:0005576
Rops2g04360 238 PRINTS Expansin/Lol pI family signature 30 48 IPR007118 GO:0005576
Rops2g04360 238 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 135 IPR007112 -
Rops2g04360 238 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 149 232 IPR007117 -
Rops2g04360 238 SUPERFAMILY PHL pollen allergen 135 231 IPR036749 -
Rops2g04360 238 PANTHER EXPANSIN-B3 15 235 - -
Rops2g04360 238 Pfam Expansin C-terminal domain 137 215 IPR007117 -
Rops2g04360 238 Gene3D - 132 236 IPR036749 -
Rops2g04360 238 Pfam Lytic transglycolase 51 125 IPR009009 -
Rops2g04360 238 CDD DPBB_EXLB_N 14 130 - -
Rops2g04360 238 Gene3D - 3 131 IPR036908 -
Rops2g04360 238 SUPERFAMILY Barwin-like endoglucanases 7 134 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04360 Rops-Chr2 79420818 79422692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04360 10 234 Expansin Gene Family AT4G17030 44.690 1.02e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04360 - - gmx:100794009 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01963 1 39723205 39725415 Rops2g04360 2 79420818 79422692 PCT