Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04346 ATGAAGTGTTTCTTCTTCAAAGATAAGTGCAAAGATAAGTGCAAATCCGCCCCAGAATTGCAGAACCGAAGCAGGGACAAAAACCCGGCTTCCAACCGTGCTACCAACTCCACCGGCTCCATAGCATCATCGTCTAAGAGCGTGAAGGATCTGTACAAAGAGAAAGAACATGACTTCAGAGTTTTTACTTTGCAGGAGCTAAGAGATGCCACAAATGGTTTCCATAGGATGCTCAAGATTGGAGAAGGGGGTTTTGGGAGTGTATATAAAGGATCCATTAGGCCCCAAGATGGGAAAGGTGATCCAATTGTAGTTGCTATAAAAAGACTCAACACTCGTGGCTTCCAGGGTCATAAAGAATGGCTAGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGATGGAGAAAGAGGAATCCAACGGCTGTTGGTGTATGAGTTCATACCCAATAGGAGCTTGGAAGATCATCTTTTCAATAGAAATTTTCCCACCCTGCCATGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCCCAAGGACTAGCTTATCTACATGAGGAACTGGAGATTCAGGTGATCTACCGAGATTTCAAATCCTCAAACGTTCTATTGGACGAGAATTTCCACCCAAAGCTCTCAGATTTCGGACTTGCTAGGGAAGGGCCACAAGGCGATCAGACTCATGTATCTACTGCGGTAGTTGGGACACATGGATATGCTGCACCAGAGTATATTGAAACAGGTCATCTCAAAGTTCAAAGTGACATGTGGAGTTTTGGTGTTGTACTCTACGAGATACTCACAGGAAGAAGGTCATTGGAAAGAAACCGTCCAACAGCAGAACAAAAGCTACTAGATTGGGTTAAACAATATCCTGCTGACACTAGCAGATTCAGCATGATAATAGACCCAAGTCTCAGGAACCAATATCCTATTGGTGCAGCTCGCAGAATAGCCAAGTTGGCTGATAGTTGCTTAAAGAAGAATCCTGAAGATAGACCCTCCATGAGTCAGATAGTTGAAAGCTTGAAGCAAACATTGCAATTTTCAGAAACATCAAACGCTTCTCATAATACTGGTGAATCCTCTCGGTCTAAATTGGTTAAGAAAAGGTAA 1152 0.4297 MKCFFFKDKCKDKCKSAPELQNRSRDKNPASNRATNSTGSIASSSKSVKDLYKEKEHDFRVFTLQELRDATNGFHRMLKIGEGGFGSVYKGSIRPQDGKGDPIVVAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEFIPNRSLEDHLFNRNFPTLPWKTRLEIMLGAAQGLAYLHEELEIQVIYRDFKSSNVLLDENFHPKLSDFGLAREGPQGDQTHVSTAVVGTHGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTSRFSMIIDPSLRNQYPIGAARRIAKLADSCLKKNPEDRPSMSQIVESLKQTLQFSETSNASHNTGESSRSKLVKKR* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04346 383 MobiDBLite consensus disorder prediction 360 374 - -
Rops2g04346 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Rops2g04346 383 Gene3D Transferase(Phosphotransferase) domain 1 160 380 - -
Rops2g04346 383 CDD STKc_IRAK 80 357 - -
Rops2g04346 383 Pfam Protein tyrosine and serine/threonine kinase 78 355 IPR001245 GO:0004672|GO:0006468
Rops2g04346 383 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Rops2g04346 383 MobiDBLite consensus disorder prediction 16 42 - -
Rops2g04346 383 ProSitePatterns Protein kinases ATP-binding region signature. 80 108 IPR017441 GO:0005524
Rops2g04346 383 SUPERFAMILY Protein kinase-like (PK-like) 57 355 IPR011009 -
Rops2g04346 383 Gene3D Phosphorylase Kinase; domain 1 53 159 - -
Rops2g04346 383 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 160 369 - -
Rops2g04346 383 MobiDBLite consensus disorder prediction 23 42 - -
Rops2g04346 383 MobiDBLite consensus disorder prediction 360 383 - -
Rops2g04346 383 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04346 Rops-Chr2 79241209 79244040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04346 3 355 Glycoside Hydrolase AT3G07070 43.132 3.33e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops2g04346 PK_Tyr_Ser-Thr 3.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04346 - - gmx:100305403 632.098