Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04327 ATGGCAGATCCACCTCCCTCCTCCACCTCCTCTTCCTCCCAATTCACCTACTCCTCCAACGCATCTTATTTCCCCATGCCCTTCCACCTCCAACAACCACCCACACACTACGACTACTCGGCGTCCTACGCGCCGGCGCCGGCACCAGTACCGGCACCGTATCCATACCAGCAGCCGCAGCAGTTCCAGAGGGAGGCGCAGCAGCTATTCCAGAGAGACGCGCAGACAATCACGCCGGAAGCCCTTGAGAACGTGAAGGCGGCGATCGCCAACAGCGAGATCGAGCACAAGGCGGATGCGAAGAAGAAGGCGGTTCCCCGTCGAGCCGCCGGTTTGACGTGGGAGGATCCGTCGCTGGCGGAGTGGCCGGAGAATGATCACCGCCTTTTCTGCGGTGACCTAGGGAACGAGGTGAACGACGACGTTTTGTCGAAGGCGTTCTCGCGGTTCCCTTCCTTCAATATGGCTAGGGTTGTGAGGGACAAGCGCTCTGGGAAAACCAAAGGCTATGGATTCGTGAGCTTCGCGGATCCCGCGGATCTTGCCGTTGCGCTTAAAGAGATGAACGGAAAGTACGTTGGGAACCGACCTATCAAGCTTTGTAAGAGCAAGTGGAAGGAGAGAACCGATTTTGATGCTATGGGGAAGCAGAAGAAGCAATCTAAGAAGAAAATCAAATCTTCCAGGGTTGGTGTCTTGCATTACTGA 708 0.5621 MADPPPSSTSSSSQFTYSSNASYFPMPFHLQQPPTHYDYSASYAPAPAPVPAPYPYQQPQQFQREAQQLFQRDAQTITPEALENVKAAIANSEIEHKADAKKKAVPRRAAGLTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPADLAVALKEMNGKYVGNRPIKLCKSKWKERTDFDAMGKQKKQSKKKIKSSRVGVLHY* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04327 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Rops2g04327 235 SMART rrm1_1 128 201 IPR000504 GO:0003723
Rops2g04327 235 MobiDBLite consensus disorder prediction 212 235 - -
Rops2g04327 235 FunFam RNA-binding protein 42 61 212 - -
Rops2g04327 235 SUPERFAMILY RNA-binding domain, RBD 111 208 IPR035979 GO:0003676
Rops2g04327 235 MobiDBLite consensus disorder prediction 219 235 - -
Rops2g04327 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 199 IPR000504 GO:0003723
Rops2g04327 235 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 220 - -
Rops2g04327 235 CDD RRM_RBM42 121 203 IPR034215 -
Rops2g04327 235 Gene3D - 52 223 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04327 Rops-Chr2 78880449 78881545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04327 129 215 Eukaryotic Initiation Factors Gene Family AT1G71770 31.034 5.16e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04327 K25079 - csav:115719182 309.301