Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04325 ATGGATCTTAGTTTTAAACACCAACTTGGCTTTATTTGTGCCATACTACTCTTACCTGCACTGAGTAACTCACAGGAATCTTTTACCGACTCCAGAGCAACATATTATGGTAGTCCTGATTGCTATGGGACTCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAGGACGGTCAATGATGGCAGTGTCGCAGGAGTGTCTAGGCTATGGAGAAATGGAAGTGGCTGTGGTGCATGCTATCAAGCTAGGTGCAAAATACCACAATACTGCGATGAAAATGGAGCATACGTGGTGGCAACAGACTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCACGTGCCTACTCAAGATTGGGACGCGATGAAGCTGCATCTGCTGAGCTTTTCAACTATGGTGTAGTGGATATTGAATACAGAAGGGTCCCCTGTAGATACACTGGCTATAACGTATTGTTTCAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTTGTGGTTCTCTATGTAGATGGAACATATGACATCACTTCTGTTGAGATGTGGCAGGTGGATTGCCAAGAATGGAGGCCCCTGCGCAGGGCCTTTGGGGCAGTGTTCGACTTTGCCAACCCTTCAAGTGGTGAAATTTACTTGAGGTTCCAAGTGAGTGGCAGTGCGGGGCTTTATTGGGTGCAGTCCAGGAATGCTATCCCTAGTGATTGGAAGGCTGGAGTTGCATATGACACTGATGTTCAGCTTAATTAG 756 0.4709 MDLSFKHQLGFICAILLLPALSNSQESFTDSRATYYGSPDCYGTPRGACGFGEYGRTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAYVVATDYGEGDRTDFIMSPRAYSRLGRDEAASAELFNYGVVDIEYRRVPCRYTGYNVLFQVHEHSRNPDYFAVVVLYVDGTYDITSVEMWQVDCQEWRPLRRAFGAVFDFANPSSGEIYLRFQVSGSAGLYWVQSRNAIPSDWKAGVAYDTDVQLN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04325 251 CDD DPBB_EXLB_N 29 145 - -
Rops2g04325 251 Gene3D - 19 145 IPR036908 -
Rops2g04325 251 Gene3D - 146 247 IPR036749 -
Rops2g04325 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Rops2g04325 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Rops2g04325 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Rops2g04325 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Rops2g04325 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Rops2g04325 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Rops2g04325 251 PANTHER EXPANSIN-B3 17 249 - -
Rops2g04325 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Rops2g04325 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Rops2g04325 251 SUPERFAMILY Barwin-like endoglucanases 15 149 IPR036908 -
Rops2g04325 251 Pfam Expansin C-terminal domain 153 235 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04325 Rops-Chr2 78846836 78848726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04325 1 250 Expansin Gene Family AT4G17030 58.167 4.26e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04325 - - gmx:100779487 473.011