Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04324 ATGCATCGTCGATACCTAAATCAAACCGTAGAACAACTCGCGTCGTCACTCGGCTTCACCCGAAGTTTGCGAGAAGCAGTTCCGTTCGTCGACGGTTTCCATGAAGCGAAGACCGCGTGTGCTGCTTTGGTTTCAGATTTTCATTCGCGTGGTGGCGAGGCAAGGCGAGTTATGATCGGAAGGTCACCAGAATCTGATCGGAGGAGAAGAACTGGACGGAGATTTGAATTGGCGGTGACCCGAGAGAAAGGAGCAGCCTATTATGGCAGCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGACTATGGAAGAACGGTCAATGATGGCAGTGTTGCGGTAGGTATGCACGGAAGGTTATGGAGGAATGGAGGTGGCTGTGGTGCATGCTATCAGGTACGGTGCAAAATACCACAATACTGCAATGACAATGGAGCAATAGTGGTGGCAACAGACTATGGTGAGGGAGACAGAACAGACTTCATCTTGAGCCCACGTGCTTTTACAAAATTAGGAAGAAATGCAGGTGCATCTGAAAAGCTGAAAAAATACGGTGTTGTGGATGTTGAATACAAAAGGGTCCCCTGTACTTTCAAGGGTGATAACATCGTGTTTCAGATCAATGAACACAAAGAGAAACCACAGCTACTTTGCCATCGTGGTTCTCTATGTAGGTGGAACAGAGATCACCACCAATGGGAGCCACTGCGCAGGGCCTATGGGGCAGTATTTGACATTGCTAACCCACCGAGAGGTGAAATCCGGTTGAGGTTCCAAGTGAGTAGCAATGGAAGGCTTAAGTGGGTGGATATGGAATCCAGGTTTGCAATCCCTGCAGGTTGGAAGGCTGGAGCTACTTATTTCACCAAGATTCAACCTTACTAG 894 0.4888 MHRRYLNQTVEQLASSLGFTRSLREAVPFVDGFHEAKTACAALVSDFHSRGGEARRVMIGRSPESDRRRRTGRRFELAVTREKGAAYYGSPDGYGNPRGACGFGDYGRTVNDGSVAVGMHGRLWRNGGGCGACYQVRCKIPQYCNDNGAIVVATDYGEGDRTDFILSPRAFTKLGRNAGASEKLKKYGVVDVEYKRVPCTFKGDNIVFQINEHKEKPQLLCHRGSLCRWNRDHHQWEPLRRAYGAVFDIANPPRGEIRLRFQVSSNGRLKWVDMESRFAIPAGWKAGATYFTKIQPY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04324 297 PANTHER EXPANSIN-B3 82 295 - -
Rops2g04324 297 Gene3D - 201 297 IPR036749 -
Rops2g04324 297 SUPERFAMILY Barwin-like endoglucanases 84 203 IPR036908 -
Rops2g04324 297 CDD DPBB_EXLB_N 85 199 - -
Rops2g04324 297 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 98 204 IPR007112 -
Rops2g04324 297 SUPERFAMILY PHL pollen allergen 228 290 IPR036749 -
Rops2g04324 297 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 235 292 IPR007117 -
Rops2g04324 297 Pfam Lytic transglycolase 122 194 IPR009009 -
Rops2g04324 297 Gene3D - 73 200 IPR036908 -
Rops2g04324 297 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576
Rops2g04324 297 PRINTS Expansin/Lol pI family signature 278 292 IPR007118 GO:0005576
Rops2g04324 297 PRINTS Expansin/Lol pI family signature 120 138 IPR007118 GO:0005576
Rops2g04324 297 PRINTS Expansin/Lol pI family signature 97 115 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04324 Rops-Chr2 78829168 78839816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04324 85 294 Expansin Gene Family AT4G17030 49.091 8.90e-70 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04324 - - psat:127074244 325.094