Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04323 ATGGCAGCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGACTATGGAAGAACGGTCAATGATGGCAGTGTTGCAGCCGTGTCTGGAAGGTTATGGAGGAATGGAGGTGGCTGTGGTGCATGCTATCAGGATTCCGGTACGGTGCAAAATACCACAATACTGCAATGACAATGGAGCAATAGTGGTGGCAACAGACTATGGTGAGGGAGACAGAACAGACTTCATCTTGAGCCCACGTGCTTTTACAAAATTGGGAAGAAATGCAGGTGCATCTGAAAAGCTGAAAAAATACGGTGTTGTGGATGTTGAATACAAAAGGGTCCCCTGTACTTTCAAGGGTGATAACATCGTGTTTCAGATCAATGAACACAGCAAAAACCCTGGCTACTTTGCCATCGTGGTTCTCTATGTAGGTGGAACGTACGAAGTCAATGCTGTTGAGATGTGGCAGAGAGATCACCACCAATGGGTGCCACTGCGCAGGGCCTATGGGGCAGTATTTGACTTTGCTAACCCACCGAGAGGTGAAATCCGGTTGAGGTTCCAAGTTAGTAGCAATGGAAGGCTTAAGTGGGTGGATATGGAATCCAGGTTTGCAATCCCTACAGGTTGGAAGGCTGGAGCTACTTATTTCACCAAGATTCAACCTTACTAG 666 0.479 MAALMAMGIQGELVALATMEERSMMAVLQPCLEGYGGMEVAVVHAIRIPVRCKIPQYCNDNGAIVVATDYGEGDRTDFILSPRAFTKLGRNAGASEKLKKYGVVDVEYKRVPCTFKGDNIVFQINEHSKNPGYFAIVVLYVGGTYEVNAVEMWQRDHHQWVPLRRAYGAVFDFANPPRGEIRLRFQVSSNGRLKWVDMESRFAIPTGWKAGATYFTKIQPY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04323 221 SUPERFAMILY PHL pollen allergen 119 215 IPR036749 -
Rops2g04323 221 PANTHER EXPANSIN-B3 50 219 - -
Rops2g04323 221 PRINTS Expansin/Lol pI family signature 101 117 IPR007118 GO:0005576
Rops2g04323 221 PRINTS Expansin/Lol pI family signature 160 174 IPR007118 GO:0005576
Rops2g04323 221 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Rops2g04323 221 SUPERFAMILY Barwin-like endoglucanases 48 117 IPR036908 -
Rops2g04323 221 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 118 IPR007112 -
Rops2g04323 221 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 132 216 IPR007117 -
Rops2g04323 221 Pfam Expansin C-terminal domain 120 194 IPR007117 -
Rops2g04323 221 Gene3D - 115 221 IPR036749 -
Rops2g04323 221 Gene3D - 28 114 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04323 Rops-Chr2 78814906 78816004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04323 50 218 Expansin Gene Family AT4G17030 52.071 1.35e-58 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04323 - - psat:127074244 290.812