Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04320 ATGACAGAGAAAGGGAAAGGGTTGGGTTTCTGGCTACGAGCAGCCTATTATGGCAGCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGACTATGGAAGAACGGTCAATGATGGCAGTGTTGCAGCCGTGTCTGGAAGGCTATGGAGGAATGGAGGTGGCTGTGGTGCATGCTATCAGGTAAGGTGCAAAATACCACAATACTGCAATGACAATGGAGCAATAGTGGTGGCAACAGACTACGGTGAGGGAGACAGAACAGACTTCATCTTGAGCCCACGTGCTTTTACAAAATTGGGAAGAAATGCAGGTGCATCTGAAAAGCTGAAAAAATACGGTGTTGTGGATGTTGAGTACAAAAGGGTCCCCTGTACTTTCAAGGGTGATAACATCGTGTTTCAGATCAATGAACACAGCAAAAACCCTGGCTACTTTGCCATCGTGGTTCTCTATGTAGGTGGAACGTACGAAGTCAATGCTGTTGAGATGTGGCAGAGAGATCACCACCAATGGGAGCCACTGCGCAGGGCCTATGGGGCAGTATTTGACTTTGCTAACCCACCGAGAGGTGAAATCCGGTTGAGGTTCCAAGTGAGTAGCAATGGAAGGCTTAAGTGGGTGGAAATGGAATCCAGGTTTGCAATCCCTGCAGGTTGGAAGGCTGGAGCTACTTATTTCACCAAGATTCAACCTTACTAG 708 0.4845 MTEKGKGLGFWLRAAYYGSPDGYGNPRGACGFGDYGRTVNDGSVAAVSGRLWRNGGGCGACYQVRCKIPQYCNDNGAIVVATDYGEGDRTDFILSPRAFTKLGRNAGASEKLKKYGVVDVEYKRVPCTFKGDNIVFQINEHSKNPGYFAIVVLYVGGTYEVNAVEMWQRDHHQWEPLRRAYGAVFDFANPPRGEIRLRFQVSSNGRLKWVEMESRFAIPAGWKAGATYFTKIQPY* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04320 235 SUPERFAMILY PHL pollen allergen 133 229 IPR036749 -
Rops2g04320 235 Pfam Lytic transglycolase 45 122 IPR009009 -
Rops2g04320 235 CDD DPBB_EXLB_N 13 127 - -
Rops2g04320 235 Pfam Expansin C-terminal domain 134 209 IPR007117 -
Rops2g04320 235 PANTHER EXPANSIN-B3 13 233 - -
Rops2g04320 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 132 IPR007112 -
Rops2g04320 235 PRINTS Major pollen allergen Lol pI signature 66 76 IPR005795 GO:0005576|GO:0019953
Rops2g04320 235 PRINTS Major pollen allergen Lol pI signature 104 119 IPR005795 GO:0005576|GO:0019953
Rops2g04320 235 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576|GO:0019953
Rops2g04320 235 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Rops2g04320 235 PRINTS Major pollen allergen Lol pI signature 206 223 IPR005795 GO:0005576|GO:0019953
Rops2g04320 235 PRINTS Expansin/Lol pI family signature 174 188 IPR007118 GO:0005576
Rops2g04320 235 PRINTS Expansin/Lol pI family signature 26 44 IPR007118 GO:0005576
Rops2g04320 235 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Rops2g04320 235 PRINTS Expansin/Lol pI family signature 115 131 IPR007118 GO:0005576
Rops2g04320 235 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Rops2g04320 235 Gene3D - 11 128 IPR036908 -
Rops2g04320 235 SUPERFAMILY Barwin-like endoglucanases 12 131 IPR036908 -
Rops2g04320 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 146 230 IPR007117 -
Rops2g04320 235 SMART dpbb_1 44 122 IPR007112 -
Rops2g04320 235 Gene3D - 129 235 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04320 Rops-Chr2 78757681 78763859 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04320 13 232 Expansin Gene Family AT4G17030 55.909 6.61e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04320 - - psat:127074244 391.349