Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04318 ATGGAACTTAGTTTTAAGCACCAACTTGGCCTCATTTATGTCATACTGCTATTTCCTGCACTGTGTAACTGCAAAGAATATTTTACTAAATCCAGAGCAGCCTATTATGGCAGCCCTGATGGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGACTATGGAAGAACGGTCAATGATGGCAGTGTTGCAGCCGTGTCTAGTAGGCTATGGAAGAATGGGGGTGGCTGTGGAGCATGCTATCAGGTAAGGTGCAAAATACCAGAATACTGCGATGACAATGGAGCAATAGTGGTGACAACAGACTATGGTGAGGGAGACAGAACAGACTTCATCTTGAGCCCACGTGCCTTCTCAAAATTGGGAAGCAACGCAGCTGCATCTGAAAAGCTGAAAAAATACGGTGTTGTGGATGTTGAATACAAAAGGGTCCCCTGTACTTTCAAGGGTGATAACATTGTGTTTCAGGTCAATGAAAACAGCAAAAACCCTGGCTACTTTGCTATTGTGATTCTCTATGTAGGTGGAACATACGAAGTCACTGCTGTTGAGATGTGGCAGAAAGATCAGTACCAATGGAAGCCACTGCGCAGGGCCAATGGGGCAGTGTTTGACTTTGCTAACCCACCCAAAGGTGAAATCCGGTTGAGGTTCCAAGTGAGTAGCAATGCACAACATGGTTCGGTGGAGTCCAAGATTGCTATCCCTAGTAATTGGAAGGCTGGAGATACGTATACCACAAAGATTCAGTTTAATTAG 759 0.4545 MELSFKHQLGLIYVILLFPALCNCKEYFTKSRAAYYGSPDGYGNPRGACGFGDYGRTVNDGSVAAVSSRLWKNGGGCGACYQVRCKIPEYCDDNGAIVVTTDYGEGDRTDFILSPRAFSKLGSNAAASEKLKKYGVVDVEYKRVPCTFKGDNIVFQVNENSKNPGYFAIVILYVGGTYEVTAVEMWQKDQYQWKPLRRANGAVFDFANPPKGEIRLRFQVSSNAQHGSVESKIAIPSNWKAGDTYTTKIQFN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04318 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Rops2g04318 252 PANTHER EXPANSIN-B3 18 251 - -
Rops2g04318 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Rops2g04318 252 Gene3D - 148 252 IPR036749 -
Rops2g04318 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Rops2g04318 252 SUPERFAMILY Barwin-like endoglucanases 16 150 IPR036908 -
Rops2g04318 252 Pfam Expansin C-terminal domain 153 228 IPR007117 -
Rops2g04318 252 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Rops2g04318 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Rops2g04318 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Rops2g04318 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Rops2g04318 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Rops2g04318 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Rops2g04318 252 Gene3D - 20 147 IPR036908 -
Rops2g04318 252 CDD DPBB_EXLB_N 29 146 - -
Rops2g04318 252 SMART dpbb_1 63 141 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04318 Rops-Chr2 78737578 78738723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04318 3 251 Expansin Gene Family AT4G17030 50.199 5.02e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04318 - - psat:127074244 423.32