Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04316 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGAGAAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCTTGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGTTGAAAATGTTGATTATGAGGATCAGAGATTTTCTAGGGTAAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAACATAAGCAGAACTATGATAATGCTGCATCTGGAGGGCTCTCCTCTGATTATAATCAAGGATTCCGAAAGGTTGTGGATGAAGATACAAGCAATAGATCAAGTTCAGGGTCAGCTATCTCAAACTCAGAAAGTTGCGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGTCATGTGCAGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGACTTATGCACTATTCTTCATGAACAGCAGTCTTATTTTTCTGCTGCCTCAGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTCATCAGGCATCCCAGCTCTATAGCTCGTGAAGAAGAATCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAGTGAGGCATATTCAAGTTCCACTACCATTCCTATGCATGGTGGTTGCAGTGGCATGAATTTTTCATCTCAGGGAGATGAAAAGGTCAGAAACTCTGCTGGGAAGACAATGCAACAGGAGCAATTTCAAAGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGTTTCATCACTGTGCTTGATAGATTTAAATGATGTAGTGAACTATGAGGAGTTTTTGAGAAACCTGACAGATGAAGAGCAGCAGCAATTACTGAAGCATCTTCCTGTGGTTGATGCTGCTAAACTTCCTGATAGCCTTAAAACCATGTTCGATAGCTTTCAATTCAAGGAGAACTTAACTTATTTTCAGCAACTTCTCGGGGAAGGTGTCTTTGATATCTCTTTATCAGGGGCAAAACCTGAAGACTGCAGGACGGTGAAAAGGCTTGCATTATCTAATCTGTCAAAGTCAAAATGGGTAGAACACTATAATTATATAAAGGGATGTGGAAACAAAGCTGGGAAATCTATTGATCGAGGATCTCCTGCTTTGGCATCAAGTAATGTTGCAGGTGTCAAGAGATTGCGTGATGGTCAAAATAAAAATATTCCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGATCATAAAGTCTAGCTGTGAGAGCAAAGAAGTTGTAGAAGATGGCTCTAGCTTCAGCCCAGAAAGCCTATTTGCATTGCCCCGTGATGGTAGCTTGCACATGCTGGATTCTTTAAACTTTGTTGATGAGAGTTCTGATCAGGATCTGCTGCTAGAGGTGCCATCTAATAGTTCTTTTCCACAGGCAGAGCTCCTGCACCCAACTTCAAGCTCTGGTGCTCAAGGCAGCACCAGTAGTAGCTCTCATGTTGCTCATCCTTAA 1614 0.4244 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARVENVDYEDQRFSRVKSISLNKNKEVKLVKHKQNYDNAASGGLSSDYNQGFRKVVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRSCAGRPKPSSVEKLTKDLCTILHEQQSYFSAASEEDLLFESETPMVSVEIGHGSMLIRHPSSIAREEESEASSLSVDNKQCLMSEAYSSSTTIPMHGGCSGMNFSSQGDEKVRNSAGKTMQQEQFQRDKSQLEKLEVLGNHVSSLCLIDLNDVVNYEEFLRNLTDEEQQQLLKHLPVVDAAKLPDSLKTMFDSFQFKENLTYFQQLLGEGVFDISLSGAKPEDCRTVKRLALSNLSKSKWVEHYNYIKGCGNKAGKSIDRGSPALASSNVAGVKRLRDGQNKNIPELKTTMRSPKRVIIKSSCESKEVVEDGSSFSPESLFALPRDGSLHMLDSLNFVDESSDQDLLLEVPSNSSFPQAELLHPTSSSGAQGSTSSSSHVAHP* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04316 537 Pfam Asx homology domain 284 367 IPR028020 -
Rops2g04316 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Rops2g04316 537 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Rops2g04316 537 PANTHER OSJNBB0038F03.10 PROTEIN 1 530 IPR044589 -
Rops2g04316 537 MobiDBLite consensus disorder prediction 511 537 - -
Rops2g04316 537 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Rops2g04316 537 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Rops2g04316 537 Gene3D - 294 387 IPR038108 -
Rops2g04316 537 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Rops2g04316 537 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Rops2g04316 537 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Rops2g04316 537 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Rops2g04316 537 MobiDBLite consensus disorder prediction 252 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04316 Rops-Chr2 78724061 78730421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04316 1 517 C2C2-Gata Transcription Factor Family AT4G17570 53.396 1.04e-159 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops2g04316 ASXH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04316 - - gmx:100799745 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01993 1 40221163 40227153 Rops2g04316 2 78724061 78730421 PCT