Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04308 ATGACGAACAAGTTCAATTCGAAATTGAGAAGCTTTCAAGTTTTCACCTTGGCCAAGAACAGTTTTCCATTTCACTTTTCATCTTCAAAAACAAGTGCTTTTAGATTCGAGATTCGCTGCATCTTTCTCGGATTCACGCCCTCCGGAAGCAGCAACCAAACAGGAAACGCAAAAGCTCTTGCAGATGGGGAAAATCACAAACAAAGGGCGCAAATTGGGAAAATTGGTACTTGGGAATGGAAGCTCACGATTGAACCCATCAACATGTTTCCAACATTACATCCAACAACCAAGGAAGCGGAACCAAATAACAACGTAAAACGAACTGGCTCACTGCTAGCGCCAAACACTTACACTGAAAGGGAGGAGCATTTTCTCAGCCTCTGTTATCGCAGCTCAAACTTCAAAGGAATCCATAAAAATCTGCGCATCAAGAATCCAGGGCAAAGATCTTATTCCCAAACTGAAGGAATGAAGTGTAGATCAAGAATGACTAGAACCAACATGAGCTATACCCTTAGGCACCGCGATCAAAGAGCAAACTATCTAGATCTAAGTGATTCATACAGTTCTGATTCAGATAATTCAAGGGTCAAGCCTCCAAGACCAACAAGAAGAAGGAGCAAGGATAGATTGGAGACTGAAATGGTGTACTCAAGAGTGGATTTGAGTGCAAGAGATGGACAAGGTTGCAGACAAGGTGGAAAAACAAGATCATTCTCTCAGAAAGCAATTGAGACTGAAATGGTGGACTCAAGTGTGGATTTGAATGCAAGACATGGACAGGGTCGTGGACAAGTTGGAAACACAAAATTATGTACTCCAAGAGCAATGGGGGCTAAAATGGATTCAAGTGTGAATTTGGTTGCTAGAAACACAACAGTATGCACTCCTACAGAAGTGGGGACAAAAATGGTCAATTCAGATGTGGATTTGATTGCAAGAAGTGGACAAAGTGGAAACACAACATTATGCCCTCCAAGGGCAATGGAGACTGAAATGGTGGACTTAAATGTGGATAAGATTGTTGGAAACACAACATTATGCACTCCAAGGGCAATGGAGAGTGAAATGGTGGATTCAAGTGCAGATTTGATTGCAAGATGTGGAAGGGGTGGTAACAAAACATTAGGCACTCCAAAAGCAACAGAAACTAAAATGGTGGACTCAAGTGTGGATCTGATTGCAAGACATGGATGGGGTGATGCGCAAGGTAGAAAGAGAACATTATGCTCTCCAAGAGCATTGGAAACTGAAATAGTGGACTCAAATGGGGATTTGATTGCTGAAAACGCAAAATTGTGCACTCCTAGAGCAATGGAGACTGAATTGGCAGACTCAAGTGTGGATTTGATTGCAAGACAAAGACGGGTTCGCGGAAAAGGTGACAACACAACATGCATTTCAAGAGAAAAGGAGGGCTCTAGTGTGGATTTGATTTCAAAACGTAAACAGGTTCATTGGGAAGGTCAAAACAGAACATTATGCACTCCAAGAGCTACGGAGAACGAAATGGTGGACTCGAGTGTGGATTTGATTGCCAGATCTAGACGGATTCACGGAAAAGGTGGAAACACAACATTATGCACTTCAAGAGCAATGGAGACTGAAATGGTGGACTCTAGTGTGGACTTGATTTCAAGACGAAGATGGGTTCATGGACGAGATGGAAAGACAGCATTATCCGCACCAAGAGCAATGGAGACAGAAATAGTGGACTCAAATGTGGACTTAATTGCTGAAAACCCAAAATTATGTGCTCGAAAAGCAAAGGATGCTGAAATGGTGGAATCAAGTCTAGATTTGGTTGCAAGATGTGGAAACAATTGTGGACGAGGTCAAAACTCAACATCATCCTCTGCAAGAGTAATGGAGACTGGTTTGGTCAGGTCTGTGGTTTTGGCTCTTGGAAACACAACATCATGCACTCCAAGAGCATTGGAGACTGAAATGGTCCCCTCAAGTGTGGATTCAATTGGAAGAAGTGTACGGGGTCGTGGGCGAGGTGGAAGGGGTCGTCGGCGGGGTGGTGGACGGGGAGGAGCGGGTACAAGATGGGGTGTACGGGGTGCACGGAGTCGTCCATCTCAAAAAAGGGAAGCAGCAAAGGGAGAACAAAACAAGGAAACTGATAATCCCAAACCAAGTTCAATAATAGAATCATCGCCTGAAGGACAAGCTACAAGCATGAAAAGGCGTTCACCTTCACCTGAACGAGTAAGGTCATGTAAAAAAACCATTTTGTCATGGTTGATAGATTGTAAGCTTATCGAGGAAGATGAACAAGTATGCTATATGGATGGGACAAAGAAAAGTGCAACTTTGACAGGAAGAATTACCAGGGGTGGAATTCTCTGCAACTGCTGCCAGAAGGAAACATCTGTGTGGACCTTTGAGAGGCACGCTGGAAGTTATCTTAGACAGCCATATGAACATATTTACCTCCTCAGAAAAGGAAAATGCCTCCAGGAATGCCAGATCGCTGCTTGGCAAAATGCCAGGGAACGAAAACGCCAGTGTATGTTTCCATATGTGCCAAAAGTAAATGCTGCAGATCAAAATGATGATGCTTGTTCAATCTGTGGTGATGGGGGAGACTTAATCTGCTGTGACCAGTGTCTCTCCACATATCATCCATCTTGTATGAATATGGAGAGGGTTCCCCACTATGATTGGTTATGTCAATATTGCACATGCAAATTCTGCGAGGTCGGTGGAGAGAGTAAGGAATTCATCACGTGCTCCCAATGTGACAAGAAGTTTCATTGGGGATGCTTGAAAGAATTTGAAGAAGAATTCGCAAAAGATACTCTAGACGTTAGCTGTTCAAGATTATATTGTGGGCCAGGCTGCAGAGAGATATACGAGAAATTGGAGGGCTCACTTGGAATCAGAACGGATATCTTTGCAAGCTACTCTTGGAGAGTCATCCGCCCAATGGGTATACCCCCGAAGGTGGTCTCTGCTGCTAGGAACCTACACATAGAAAATAATTCAAAGGTTGCAGTTGCTTGGATGTTAATGAATGAAGTTTTCGACACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAGTATAGTTTACAGTCGGGGATCAAACATAACCAGGATTGATTTTAGCCGTTTTTATACATTTGTCCTGGAGAAAGATGACGAGATCATTGCTGCAGCTTCTATAAGATTTCATGGGAGAGAGATGGCGGAAATGCCTTTTATTGCCACAGAAGAGGCATACAGGGGTCAAGGAATGTGCCGGTCATTAATGGAGGTAATTGAAAAGTTCGTATGTAGCCTCAAAGTCAAAAACTTGATCATTCCATCTGCTCCGGAGACTTCTGGGATGTGGAAGTGCAAGTACAAATTCAATGAGATTAGCAAAGAGTTGAAGAGAAAAATAGCCTCCTATAACATTTTGATGTTCCCTCGTGCATTAAGACTGTACAAGGACGTGTCAAAAAGCAAGGCTGGTAAGGACATGTCAAAAAGCAAGGCTGGTGAGGACGTTGGTGAGGACATGTCAAAAAGCATGGCTGGTGAGGACGTTGGTGAGGACATGTCAAAAAGCATGGCTGACGGTGGCAATGACAATGAAGACAATCAAACTGACATTCAGAATGGTCAGGAATCACAAACAGAGCAGGCAGAGAGACCACTTTTAGACTTGAATGTGGACCCTCATCAGGAAGATTAG 3696 0.4345 MTNKFNSKLRSFQVFTLAKNSFPFHFSSSKTSAFRFEIRCIFLGFTPSGSSNQTGNAKALADGENHKQRAQIGKIGTWEWKLTIEPINMFPTLHPTTKEAEPNNNVKRTGSLLAPNTYTEREEHFLSLCYRSSNFKGIHKNLRIKNPGQRSYSQTEGMKCRSRMTRTNMSYTLRHRDQRANYLDLSDSYSSDSDNSRVKPPRPTRRRSKDRLETEMVYSRVDLSARDGQGCRQGGKTRSFSQKAIETEMVDSSVDLNARHGQGRGQVGNTKLCTPRAMGAKMDSSVNLVARNTTVCTPTEVGTKMVNSDVDLIARSGQSGNTTLCPPRAMETEMVDLNVDKIVGNTTLCTPRAMESEMVDSSADLIARCGRGGNKTLGTPKATETKMVDSSVDLIARHGWGDAQGRKRTLCSPRALETEIVDSNGDLIAENAKLCTPRAMETELADSSVDLIARQRRVRGKGDNTTCISREKEGSSVDLISKRKQVHWEGQNRTLCTPRATENEMVDSSVDLIARSRRIHGKGGNTTLCTSRAMETEMVDSSVDLISRRRWVHGRDGKTALSAPRAMETEIVDSNVDLIAENPKLCARKAKDAEMVESSLDLVARCGNNCGRGQNSTSSSARVMETGLVRSVVLALGNTTSCTPRALETEMVPSSVDSIGRSVRGRGRGGRGRRRGGGRGGAGTRWGVRGARSRPSQKREAAKGEQNKETDNPKPSSIIESSPEGQATSMKRRSPSPERVRSCKKTILSWLIDCKLIEEDEQVCYMDGTKKSATLTGRITRGGILCNCCQKETSVWTFERHAGSYLRQPYEHIYLLRKGKCLQECQIAAWQNARERKRQCMFPYVPKVNAADQNDDACSICGDGGDLICCDQCLSTYHPSCMNMERVPHYDWLCQYCTCKFCEVGGESKEFITCSQCDKKFHWGCLKEFEEEFAKDTLDVSCSRLYCGPGCREIYEKLEGSLGIRTDIFASYSWRVIRPMGIPPKVVSAARNLHIENNSKVAVAWMLMNEVFDTITDRHTGINVVQSIVYSRGSNITRIDFSRFYTFVLEKDDEIIAAASIRFHGREMAEMPFIATEEAYRGQGMCRSLMEVIEKFVCSLKVKNLIIPSAPETSGMWKCKYKFNEISKELKRKIASYNILMFPRALRLYKDVSKSKAGKDMSKSKAGEDVGEDMSKSMAGEDVGEDMSKSMADGGNDNEDNQTDIQNGQESQTEQAERPLLDLNVDPHQED* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04308 1231 MobiDBLite consensus disorder prediction 1157 1231 - -
Rops2g04308 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 846 901 IPR013083 -
Rops2g04308 1231 MobiDBLite consensus disorder prediction 645 738 - -
Rops2g04308 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 902 952 IPR013083 -
Rops2g04308 1231 CDD PHD_SF 898 936 - -
Rops2g04308 1231 PANTHER PHD FINGER PROTEIN 12 686 1217 IPR042163 GO:0003714|GO:0045892
Rops2g04308 1231 SUPERFAMILY FYVE/PHD zinc finger 832 899 IPR011011 -
Rops2g04308 1231 MobiDBLite consensus disorder prediction 711 733 - -
Rops2g04308 1231 SMART PHD_3 901 952 IPR001965 -
Rops2g04308 1231 SMART PHD_3 857 898 IPR001965 -
Rops2g04308 1231 Pfam Tify domain binding domain 777 828 IPR032308 -
Rops2g04308 1231 MobiDBLite consensus disorder prediction 1194 1218 - -
Rops2g04308 1231 MobiDBLite consensus disorder prediction 1157 1188 - -
Rops2g04308 1231 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1038 1107 IPR016181 -
Rops2g04308 1231 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1006 1192 IPR000182 GO:0016747
Rops2g04308 1231 ProSiteProfiles Zinc finger PHD-type profile. 855 900 IPR019787 -
Rops2g04308 1231 CDD NAT_SF 1047 1107 - -
Rops2g04308 1231 MobiDBLite consensus disorder prediction 693 710 - -
Rops2g04308 1231 MobiDBLite consensus disorder prediction 184 211 - -
Rops2g04308 1231 Gene3D - 1015 1139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04308 Rops-Chr2 78594799 78603199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04308 720 1152 PHD Transcription Factor Family AT4G14920 40.980 1.06e-101 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04308 - - pvu:PHAVU_009G190800g 721.465