Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04305 ATGAATGAACAAAGTAGCCATGAGTCCGATTTGGCCCTTTTGGACTCAATTCGCCGCCACTTATTGGGTGAATTCGAATCAATATTCGGAACTCCGACAACAGTTTCGGGTAACACTAAAGTTTACTCTCGGAGCTCCAGTTTCAGCAAATTGTCCCCGTGTTTGAGTGATAACTGGGGTGAATTGCCGCTAAAGGAGGATGATTCAGACGACATGGTTCTCTACGGTGTGCTCCGTGACGCTCTTAACGTTGGCTGGGTCCCATCTCTCGATTCCGGGTCACCCGGATGTATCTCTTTGGGTTACCCGTCGGAAATCACAGTAAAGCCGGAGCCGATGGAAAATATCACCCCTGAGTTCACGGCGGTGTCTCCGGTGGTCCCGCAAAAGCAGAAGGCTGCTCCGGTTAAGGGGAAGCACTACCGCGGCGTGAGGCAACGTCCGTGGGGGAAGTTTGCGGCGGAGATCCGAGACCCGGCGAAGAACGGAGCTAGGGTTTGGCTCGGAACATTCGAGACCGCCGAGGATGCCGCGTTGGCTTATGATAGAGCCGCGTATAGGATGAGAGGATCGAGAGCGTTGCTGAATTTTCCACTTCGGGTAAACTCCGATGAACCCGACCCGGTTAGGGTTACTTCGAAGCGGTCTTCGCCGGAGCGATCTTCTTCGTCGCCGCCGGCGAAGCGGAAGAAGGTGGTGACAGCTCAGAGGGGATTGAAAACGGGGCAAGTGGGAAGTCAAGTGGCACAGTGCACACGTGGAGAACAGTTATTGGTCAGTTAA 783 0.5402 MNEQSSHESDLALLDSIRRHLLGEFESIFGTPTTVSGNTKVYSRSSSFSKLSPCLSDNWGELPLKEDDSDDMVLYGVLRDALNVGWVPSLDSGSPGCISLGYPSEITVKPEPMENITPEFTAVSPVVPQKQKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSDEPDPVRVTSKRSSPERSSSSPPAKRKKVVTAQRGLKTGQVGSQVAQCTRGEQLLVS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04305 260 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Rops2g04305 260 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Rops2g04305 260 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Rops2g04305 260 Gene3D AP2/ERF domain 139 201 IPR036955 GO:0003700|GO:0006355
Rops2g04305 260 MobiDBLite consensus disorder prediction 206 247 - -
Rops2g04305 260 SUPERFAMILY DNA-binding domain 140 200 IPR016177 GO:0003677
Rops2g04305 260 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Rops2g04305 260 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Rops2g04305 260 Pfam AP2 domain 140 190 IPR001471 GO:0003700|GO:0006355
Rops2g04305 260 PANTHER DNA-BINDING DOMAIN 124 228 IPR044808 GO:0003700|GO:0009873
Rops2g04305 260 MobiDBLite consensus disorder prediction 215 229 - -
Rops2g04305 260 FunFam Ethylene-responsive transcription factor 2 139 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04305 Rops-Chr2 78554336 78555498 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04305 1 259 AP2-EREBP Transcription Factor Family AT4G17500 56.318 3.08e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g04305 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04305 K09286 - gmx:100803653 324.709