Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04303 ATGAATGGACTAAGTTGCTATGAGTCCGATTTGGCCCTTTTGGACTCAATTCGCCGCCACTTATTGGCTGAATCCGAATCAATATTCGGAGTTCCGACTAAAGTTTACTCTCGGAGCTCCAGTTTCAGCAAATTGTCCCCGTGTTTGAGTGATAACTGGGGTGAATTGCCGCTAAAGGAGGATGATTCAGAAGACATGGTTCTCTACGGTGTGCTCCGTGACGCTCTTAACGTTGGCTGGGTCCCATCTCTCGATGCCGGGTCACCCGGATGTATCTCTTCGTCGGAAATCACGGTAAAGCCGGAGCCGGTGGAAAATATCACCCCTGAGTTCACGGCGGTGTCTCCGATGGTCCCGCAGAAGCCGAAGGCTGCTCCGGTTAAGGGGAAGCACTACCGCGGCGTTAGGCAACGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGAGACCCGGCGAAGAACGGAGCTAGGCTTTGGCTCGGAACATTCGAGACCGCTGAGGATGCCGCGTTGGCTTATGATAGAGCCGCGTATAGGATGAGAGGATCGAGAGCGTTGCTGAATTTTCCACTTCGGGTAAACTCCGATGAACCCGACCCGGTTAGGGTTACTTCGAAGCGGTCTTCGCCGGAGCGTTCTTCTTCGTCGCCGCCGGCGAAGCGGAAGAAGGTGGTGACTGCTCAGGGGGAATTAAAAACTGGGCAAGTGGGAACTCAAGTGGCACAGTGTACACGTGGAGAACAGTTATTATTGGTCAGTTAA 759 0.5415 MNGLSCYESDLALLDSIRRHLLAESESIFGVPTKVYSRSSSFSKLSPCLSDNWGELPLKEDDSEDMVLYGVLRDALNVGWVPSLDAGSPGCISSSEITVKPEPVENITPEFTAVSPMVPQKPKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARLWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSDEPDPVRVTSKRSSPERSSSSPPAKRKKVVTAQGELKTGQVGTQVAQCTRGEQLLLVS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04303 252 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Rops2g04303 252 MobiDBLite consensus disorder prediction 197 235 - -
Rops2g04303 252 PANTHER DNA-BINDING DOMAIN 120 219 IPR044808 GO:0003700|GO:0009873
Rops2g04303 252 MobiDBLite consensus disorder prediction 206 220 - -
Rops2g04303 252 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Rops2g04303 252 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Rops2g04303 252 FunFam Ethylene-responsive transcription factor 2 130 190 - -
Rops2g04303 252 SUPERFAMILY DNA-binding domain 131 191 IPR016177 GO:0003677
Rops2g04303 252 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Rops2g04303 252 Gene3D AP2/ERF domain 130 192 IPR036955 GO:0003700|GO:0006355
Rops2g04303 252 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Rops2g04303 252 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04303 Rops-Chr2 78526979 78528055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04303 8 251 AP2-EREBP Transcription Factor Family AT4G17500 54.478 1.67e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g04303 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04303 K09286 - gmx:100803653 318.161