Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04302 ATGGCTAACGCAGCTGAAGTTTCAGCTCTTAACCGCATCAAATTACATCTTCTAGGTGAACTCTCTCCACTAGGTACTCCCCTAAACAAACAATCATGGTTTGAATTTAACGGAACAAACCCTAGCACCTCTCAATCTGAATCCCTCTCTTCCTCTTCTGATTCTTTCAGCTCTTTGGATCATTACTTCAGTAACCTCCTTGAAACGGAAACACAGCTTCCTGTGTTTGAATTTGATTCCAAACCCCAAGTCATCGACCTTGAAACCCCGAAAGCCCTAACATCGAATTATCCACCTCCACAAAGCGTAGAGAAGTCTCTAAATCGGAAACCGTCGCTGCAAATCTCTCTCCCGAAGAACACCGAGTGGATCCGATTCGGAAACCCGGATCCGAAACCGGAGGCTCCGGAATTGAACCAACAACCGGAGTCTGAGGAGAAGAAGCACTACAGAGGGGTCCGACGGAGACCGTGGGGCAAGTTCGCCGCCGAGATCCGTGACCCGAACAAGCGCGGGTCAAGGGTGTGGCTTGGAACGTTCGAAACCGCCATCGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTTAAACTTCGCGGCTCGAAAGCCATTCTCAACTTCCCTCACGAAGTTGGCGCCGCTGCGGAGGCCGCCGGAGACGGCGAGAGGAAACGCCGCCGTGAAGAGGAGGAGGAGGAAGAAGTGAAGGTGGTGGTGAAAAAGGAGAAAACGACGGAATCGGATTTGAACTGTATTAAGGAGATTCCGTTGACGCCGTCTATTTGGACCGGGTTCTGGGACACAGATGTTAAGGGGGTTTTCACCGTGCCGCCGTTGTCGCCGTTATCTCCCCTTCCCTCATTGGGTTATTCACAGTTAATGGTTGTGTAA 888 0.5158 MANAAEVSALNRIKLHLLGELSPLGTPLNKQSWFEFNGTNPSTSQSESLSSSSDSFSSLDHYFSNLLETETQLPVFEFDSKPQVIDLETPKALTSNYPPPQSVEKSLNRKPSLQISLPKNTEWIRFGNPDPKPEAPELNQQPESEEKKHYRGVRRRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFKLRGSKAILNFPHEVGAAAEAAGDGERKRRREEEEEEEVKVVVKKEKTTESDLNCIKEIPLTPSIWTGFWDTDVKGVFTVPPLSPLSPLPSLGYSQLMVV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04302 295 MobiDBLite consensus disorder prediction 89 153 - -
Rops2g04302 295 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Rops2g04302 295 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Rops2g04302 295 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Rops2g04302 295 SUPERFAMILY DNA-binding domain 149 209 IPR016177 GO:0003677
Rops2g04302 295 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Rops2g04302 295 MobiDBLite consensus disorder prediction 94 121 - -
Rops2g04302 295 MobiDBLite consensus disorder prediction 139 153 - -
Rops2g04302 295 Pfam AP2 domain 149 199 IPR001471 GO:0003700|GO:0006355
Rops2g04302 295 FunFam Ethylene-responsive transcription factor 2 148 208 - -
Rops2g04302 295 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Rops2g04302 295 PANTHER DNA-BINDING DOMAIN 111 229 IPR044808 GO:0003700|GO:0009873
Rops2g04302 295 CDD AP2 148 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04302 Rops-Chr2 78483846 78484913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04302 1 295 AP2-EREBP Transcription Factor Family AT5G47230 49.511 1.41e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g04302 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04302 K09286 - gmx:100800453 308.531