Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04293 ATGACCCGGCGATGCTCGCATTGCAGCCACAATGGGCACAACTCTAGGACCTGCCCCAATCGTGGGGTCAAGCTCTTCGGGGTCCGATTAACTGACGGGTCGATCCGGAAGAGTGCTAGTATGGGTAATCTGACCCATTATGCTGGCTCCGGGTCTGGACCCCACCATGCCGGGTCTAATAACCCGGGTTCTCCTGGTGAAACCCCTGATCACGCCGCCGCCGACGGTTACGCTTCTGAGGACTTTGTTCCTGGCTCTTCTTCTAGTTCCCGTGAAAGAAAGAAGGGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGTAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACTCCTACTCAAGTTGCCAGTCATGCTCAGAAATATTTTATCAGGCAAAGCAACGTGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGCATCTGACACTCCAATGGTACCACAAGACTTCTTGTCAGCTAATCAACTACAGGCTGAAACTGAAGGCAATAACCCCTTGCCTGTTCCTCCGCCCCTCGATGAAGAGTGTGAATCCATGGACTCCACCAACTCAAATGATGGAGATTCTGCCCCATTAAAGCCTGAGAACAACACACAACCATCTTACCCGGTGGTATATCCTGCATATTATTCTCCATTCTTCCCATTTCCTCTCCCCTATTGGTCTGGATACAGTCCAGAGCCCACTAAGAAGGAGACACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTTGATGAACTGGTTGGCATGTCAAAATTGAGTTTAGGCGACTCGATTGGTGACTCTGGCCCCTCCTCTCTGTCTCGAAAACTTCTTGAAGAAGGACCCTCTAGACAATCAGCTTTTCATGCAACTCCAACATGTGACAGTTCAAATATGAGTGGCAGTCCCATCCATGCAGTTTGA 1002 0.486 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPHHAGSNNPGSPGETPDHAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEASDTPMVPQDFLSANQLQAETEGNNPLPVPPPLDEECESMDSTNSNDGDSAPLKPENNTQPSYPVVYPAYYSPFFPFPLPYWSGYSPEPTKKETHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSRKLLEEGPSRQSAFHATPTCDSSNMSGSPIHAV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04293 333 SUPERFAMILY Homeodomain-like 93 148 IPR009057 -
Rops2g04293 333 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Rops2g04293 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Rops2g04293 333 MobiDBLite consensus disorder prediction 42 100 - -
Rops2g04293 333 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Rops2g04293 333 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Rops2g04293 333 CDD SANT 98 143 IPR001005 -
Rops2g04293 333 FunFam transcription factor MYB1R1 97 148 - -
Rops2g04293 333 PANTHER TRANSCRIPTION FACTOR KUA1 3 271 - -
Rops2g04293 333 MobiDBLite consensus disorder prediction 312 333 - -
Rops2g04293 333 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g04293 333 Gene3D - 97 149 - -
Rops2g04293 333 MobiDBLite consensus disorder prediction 208 224 - -
Rops2g04293 333 MobiDBLite consensus disorder prediction 289 333 - -
Rops2g04293 333 MobiDBLite consensus disorder prediction 186 224 - -
Rops2g04293 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 146 IPR006447 GO:0003677
Rops2g04293 333 SMART sant 95 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04293 Rops-Chr2 78239362 78243390 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops2g04293 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04293 - - ccaj:109807943 582.408