Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04289 ATGGCACCAAGAAATGATGGACCAACTAAGAAGGCAATGAACAGAGGAGCATGGACCCCAGAGGAAGATCGAAAGCTAGCCCAATGCATTGAAATTCATGGAGCAAAAAGGTGGAAGACTGTTGCAGTCAAATCAGGTCTAAATAGGTGTGGAAAGAGTTGCAGGCTGAGATGGTTAAATTATCTGAGACCCAATATCAAGAGGGGGAATATATCAAATGAAGAAGAGGATTTGATTCTTAGGCTTCATAAACTTCTGGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTACCAGGACGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGTTATCCACAAAGAGGAAAAACCAGAAGCTTCCACGGCACAAGAAACTACCGCACAGAACAGTAGTCCTGGGGACGGTGCCATGTTAGAGAATAAGGACCAAATTTATGGAAGTTGTAACTCAGATATTGGCTTTGATGTGAACGAATTCTTCAACTTTTCCAATGAAGGACCTTATGGGTTTGATTGGATGAACAAGTACTTAGAACTTGATCAGATTAATGAGTACCAAAAAGATCTGAATGAGCATTAG 600 0.4067 MAPRNDGPTKKAMNRGAWTPEEDRKLAQCIEIHGAKRWKTVAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISNEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVIHKEEKPEASTAQETTAQNSSPGDGAMLENKDQIYGSCNSDIGFDVNEFFNFSNEGPYGFDWMNKYLELDQINEYQKDLNEH* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04289 199 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Rops2g04289 199 FunFam transcription repressor MYB5-like 72 138 - -
Rops2g04289 199 MobiDBLite consensus disorder prediction 128 143 - -
Rops2g04289 199 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops2g04289 199 SMART sant 67 115 IPR001005 -
Rops2g04289 199 SMART sant 14 64 IPR001005 -
Rops2g04289 199 Gene3D - 71 140 - -
Rops2g04289 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops2g04289 199 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Rops2g04289 199 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Rops2g04289 199 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Rops2g04289 199 MobiDBLite consensus disorder prediction 121 147 - -
Rops2g04289 199 FunFam MYB-related transcription factor 14 67 - -
Rops2g04289 199 CDD SANT 72 113 IPR001005 -
Rops2g04289 199 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 9 138 - -
Rops2g04289 199 Gene3D - 8 68 - -
Rops2g04289 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Rops2g04289 199 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04289 Rops-Chr2 78142780 78143849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04289 9 126 MYB Transcription Factor Family AT3G13540 63.559 5.59e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g04289 Myb_DNA-binding 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04289 K09422 - gmx:100811754 305.064