Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04275 ATGGAAAGGCACAAATGCAAGCTTTGTTCAAGAACATTTGCCAATGGAAGAGCACTTGGTGGACACATGAAGGCTCATCTTGCCACCTTGCCCCTTCCTCCAAAACCTGAACCATTCACTGAGTTTGCTTCTTTGTCATATTCCTCTTCAGAATCAGAACAAGAAGTGGAAGAACAACATAGAGAATCTGAGGAAAAGGCTCTGATTTATGGGTTGAGGGAGAATCCCAAGAAAAGTCTCAGGCTTGCAGATCCTGAGTTTTCTTTTGTACCTGATACTGGGTTTGTGATCCAAGACAGAGAGAGTGAGACTGAGTCAAAGAACCCAACTCGCAAACGATCCAAGAGGAATCGGAAGTCTAGCATAGTGGGTAGCCAGAACCAGAATTTGGAACCCAAAAAACCAAAGTTTAGTTTCATGGTGTCAACTCCACCAACTGAGCCTGAACCTGTGAGTTCAGTTTCTGACACTTCCCCTGAAGAAGATGTTGCCATGTGCCTCATGATGCTTTCTAGGGACAGGTGGAGGAAGAATAATGCATTTGAACAAGGTCAAGAGCAAGAAGAACAAAAGGTGGAGACAAAATCAAACAAAGAGATCAAGTTCAAGAGAGTTAGAGGGAAGCACCTTTGTGAAAATTGTGGGAAAGTGTTTCGATCTTCTAGAGCATTGGGGAGTCACAGAAGTATTTGCTGTAGTGATGAAGCAAGGGTCAAAGGTGAAGGGAATGGTAATGACAAGATTTTTGAATGCCCGTTTTGTTACAAGGTGTTTGGGTCAGGTCAAGCACTTGGTGGCCATAAGAGATCTCACCTTATCCCATCTTCATCATCAACTGTTAATGATTCTGCTAGATTGAAAGAGAGCTTCATAGATCTCAATTTGCCTGCCCCACCTGAAGAAGATGAACTCAGTGTTGTTTCTGATGCGTAA 933 0.4319 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPEPFTEFASLSYSSSESEQEVEEQHRESEEKALIYGLRENPKKSLRLADPEFSFVPDTGFVIQDRESETESKNPTRKRSKRNRKSSIVGSQNQNLEPKKPKFSFMVSTPPTEPEPVSSVSDTSPEEDVAMCLMMLSRDRWRKNNAFEQGQEQEEQKVETKSNKEIKFKRVRGKHLCENCGKVFRSSRALGSHRSICCSDEARVKGEGNGNDKIFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSARLKESFIDLNLPAPPEEDELSVVSDA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04275 310 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 310 IPR044303 GO:0006355
Rops2g04275 310 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Rops2g04275 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 271 IPR013087 -
Rops2g04275 310 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Rops2g04275 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Rops2g04275 310 Pfam C2H2-type zinc finger 209 228 - -
Rops2g04275 310 Pfam C2H2-type zinc finger 3 28 - -
Rops2g04275 310 Pfam C2H2-type zinc finger 249 272 - -
Rops2g04275 310 MobiDBLite consensus disorder prediction 145 159 - -
Rops2g04275 310 Coils Coil 307 310 - -
Rops2g04275 310 SMART c2h2final6 209 229 IPR013087 -
Rops2g04275 310 SMART c2h2final6 4 26 IPR013087 -
Rops2g04275 310 SMART c2h2final6 249 271 IPR013087 -
Rops2g04275 310 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Rops2g04275 310 SUPERFAMILY beta-beta-alpha zinc fingers 209 271 IPR036236 -
Rops2g04275 310 MobiDBLite consensus disorder prediction 94 159 - -
Rops2g04275 310 Gene3D Classic Zinc Finger 206 271 - -
Rops2g04275 310 MobiDBLite consensus disorder prediction 41 65 - -
Rops2g04275 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04275 Rops-Chr2 77970434 77971808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04275 1 307 C2H2 Transcription Factor Family AT3G60580 37.920 3.35e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g04275 zf-C2H2_6 8.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04275 - - gmx:100815124 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02049 1 41214531 41215542 Rops2g04275 2 77970434 77971808 PCT