LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g04264	ATGGCTTCTCTGTTCCCCAAAACCCTAATTGCGACTCGTCTCCTTCACCGAACTCGAATCCATTCTTCCAAACTAACCACCATTCGAGCCATGAGCACCGGGTCCAACCAGCGCGTCTTCCAGCTCAAGCTTGACCCACTAACCGGTAACTCTGAATGGGTCGTTATTGAGGAAGACGACGAACAAAGCTTCGCCGAGAATTTCCACCAACCACTTCTCGCCACGACGTCGTATTTGGACATGCTAAACGACTCCACCAGAAACAGAGCATTCCGCGAAGCCATTGAAAAAACCATCACAAAACCTTGCCACGTTCTTGATATCGGTGCTGGAACTGGTTTGCTTTCGATGATGGCTTCGCGAGCTATGGGTGGCGAAGGTACAGTAACGGCGTGTGAGTCTTACCTTCCGATGGTGAAGTTGATGAAGAAGGTGCTGCGGCTTAATGGAATGGAAGGAAGAATCAAAGTCTTTAACAAGCGCTCTGATGAACTCAAAGTTGGCCATGATATACCTTCACGTGCGGATGTTCTTGTAAGCGAGATACTAGATTCAGAATTACTGGGTGAGGGGCTTATACCGACCCTGCAACATGCACATGACAGTTTGTTGACGGAAAACCCTCTGACTGTGCCATATCGAGCTACTACATATGGACAGCTGGTTGAAAGCACATTCTTGTGGCAGCTGCATGATTTGCATAACAATGAGGTTGGTGCATCTGATGGCATTCGTCTTACCCCTCCAGGACTTGATAGCGTTTTAAGTGTCAAACGTCAGCAATATGCCGTGCATTGTGATCCAATAGAAGATATAAAACTGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGAGAAACTGAGCTGTGCATAAAGGCAACTAATGACGGTAGAGTCCATGCTGTCATATCCTGGTGGGTACTTCAACTAGATGGTGAAGGGACAATCTATTATTCCACTGCTCCTAGGTGGATAAGCTCACAAACAAAAAAAAGTCCTGTTGATTGGTGTGACCACTGGAAACAGTGTGTCTGGTTTGTTCCAGGCAGTGGTATATCCATATTCAAAGGGGAAGAAATTTATTTACATGCTACTCATACTGATACTAGTATCTCCTATAATTTCGATTCCCAAGTGCCAACAGCTGAGGTTTTGCATCATGGGTTGACGACTGGAGATTTGCAGCTTGTACTGCCACCAGAAAGGGCTGCAATCTATGGAGACAAAGGATGGAGGCTTTCAATATTGAAAGCAGTAAAAAGTGTGTTGCAGGGAAGAGGTCGCTCATTATGCATGGTTGCAGATGATAGTGTGTTTTTACCTCTTCTTGTGGCACAACTTTCAGAAGCACCTCATGTAATATCATTACTTCCGGGGTTGAAGGAAAGGGGCCTCCAATATTTGCAAGCTGCTGCCCATGCAAATCATTTGTCACCTAATTGCATAGAAGTTCTTGAAAAAAGGGTGAAACAATTAACAATGCATGATACACACCAAAAAAAGGTTGATCTTTTAATAGCAGAACCTTTCTACGTTGGACATGATGGCATGCTTCCATGGCAGAACCTACGGTTTTGGAAGGATCGTACGATACTTGATTATATCCTCTCTGAAGATGCTCTGATAATTCCTTGTAAAGGAATATTGAGGGCTTGTGCCATCTATCTTCCTGATCTTTGGAAAAGTCGTTGCTGCTTGAGTAAGATAGAGGGTTTTGACCATTCAGTGGTAAATGCCACATTGGGGGCTTGCGGTCATCTACCTGAATTGGAAGAAGGTCCTTGTCTGCCATTTTTTGTCTGGCAGTGCGGAGAATTTGACGTGCTTAGTGAGACATTTGACGTGATGAAGTTTGATTTCTCAAAACAAATACACCAATGTCAAGGAAAATCCCAGGTTAAATTCACCAAGACCGGGGTATGTCATGGGTTTGTATTATGGATTGACTGGGTGATGGATTTGCAAAATTCCATTGTGATATCAACTGGTCCAGATAAGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGCAACACCTAGAACAGTAGGACCCCAAGGATCGAGAAATGTCCAAGCATGTTCCTCTGCCGTTCTTGAAGCATTTTTTAATCCATTAAAGGGGGAACTCAAGATTATACCTGATTTCTTATGA	2178	0.438	MASLFPKTLIATRLLHRTRIHSSKLTTIRAMSTGSNQRVFQLKLDPLTGNSEWVVIEEDDEQSFAENFHQPLLATTSYLDMLNDSTRNRAFREAIEKTITKPCHVLDIGAGTGLLSMMASRAMGGEGTVTACESYLPMVKLMKKVLRLNGMEGRIKVFNKRSDELKVGHDIPSRADVLVSEILDSELLGEGLIPTLQHAHDSLLTENPLTVPYRATTYGQLVESTFLWQLHDLHNNEVGASDGIRLTPPGLDSVLSVKRQQYAVHCDPIEDIKLLSEPFKIFEFDFWKRPESYGETELCIKATNDGRVHAVISWWVLQLDGEGTIYYSTAPRWISSQTKKSPVDWCDHWKQCVWFVPGSGISIFKGEEIYLHATHTDTSISYNFDSQVPTAEVLHHGLTTGDLQLVLPPERAAIYGDKGWRLSILKAVKSVLQGRGRSLCMVADDSVFLPLLVAQLSEAPHVISLLPGLKERGLQYLQAAAHANHLSPNCIEVLEKRVKQLTMHDTHQKKVDLLIAEPFYVGHDGMLPWQNLRFWKDRTILDYILSEDALIIPCKGILRACAIYLPDLWKSRCCLSKIEGFDHSVVNATLGACGHLPELEEGPCLPFFVWQCGEFDVLSETFDVMKFDFSKQIHQCQGKSQVKFTKTGVCHGFVLWIDWVMDLQNSIVISTGPDKRYWKQGVKLLATPRTVGPQGSRNVQACSSAVLEAFFNPLKGELKIIPDFL*	726

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g04264	725	FunFam	Protein arginine N-methyltransferase	71	213	-	-
	Rops2g04264	725	Gene3D	-	557	723	-	-
	Rops2g04264	725	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	60	385	IPR025799	GO:0016274\|GO:0018216
	Rops2g04264	725	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	474	694	IPR029063	-
	Rops2g04264	725	Gene3D	Vaccinia Virus protein VP39	404	553	IPR029063	-
	Rops2g04264	725	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	78	386	IPR029063	-
	Rops2g04264	725	PIRSF	Arg_N-mtase	37	721	IPR014644	GO:0006479\|GO:0008168
	Rops2g04264	725	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	476	695	IPR025799	GO:0016274\|GO:0018216
	Rops2g04264	725	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	391	725	IPR025799	GO:0016274\|GO:0018216
	Rops2g04264	725	Pfam	Ribosomal protein L11 methyltransferase (PrmA)	93	185	-	-
	Rops2g04264	725	Gene3D	-	214	396	-	-
	Rops2g04264	725	FunFam	Protein arginine N-methyltransferase 1.6	557	724	-	-
	Rops2g04264	725	Gene3D	Vaccinia Virus protein VP39	71	213	IPR029063	-
	Rops2g04264	725	FunFam	Protein arginine N-methyltransferase 7	403	553	-	-
	Rops2g04264	725	FunFam	Protein arginine N-methyltransferase 1.6	214	397	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g04264	Rops-Chr2	77717404	77723365	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g04264	66	218	C2H2 Transcription Factor Family	AT3G12270	30.952	9.93e-12	66.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g04264	K11438		-	gmx:100785846	1274.61