Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04243 ATGGATTTGAAGTCCTCTCATGGTTCTCCTATTCTAACTGATCCTGTTCCTGTCAACAAGTCAAGGCTTGGAATCCATTCTAGTCTGCTAGGCTATTCCCAGCAAGATTCATCACTCTCTGCAGGGAAATACACAAAAAGCAATTCAAAGAAAAGTATAGGGAGTCTTGACGATGTCAGGTCTAATGGTTGGTTGGATGCCATGAAGGCTTCTTCACCTCCAAGGAAGAAGCTACTTAAAGGTTCGAGCGCTCAGGTTGCTTCTATTGACTATGACATTGAAGACTATAATTCATGGATGTTGCAATATCCTTCAGCACTAGACTCTTTTGAGAAAACTATTGACCGTGCAAAGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCGCCAATAGTAGATGATCCTGATTGTGCCTTTATGTCTGAACCTATGCGTGCAACTGTGAGAAGAGTAGCAAAGTATTTCCCTACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATTTGGTTAAACTAACAGAACTCTACTACGCTGGTAGTCACGGGATGGACATTATTGGCCCTGCTAGTGAGAATTTGTCCAAAAACGATCCGAATTGTGTCAAGTCTACTGACCATCAGGGAAAGGAGATAACTCTCTTTCAACCTGCAAGAGAATTCCTGCCTATGATTGATGAGGTTTTTAAAACCCTCATCGAGATTACTAAAGATATAGAAGGCGCAAAAGTTGAAAACCACAGGTTTTGCGTTTCTGTACATTACCGTAATGTAGAAGAGAATAATTGGACAACAATTGGACAACTTGTCCATGATGTCTTAAAAAATTACCCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAGTCCGTCCTATGATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTTCTTGAATCTCTAGGGTTAACTGATAGGAATGATGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGGGAGAGCAATCGAGGTTATGGGATTTTGGTTTCATCAGTGAGGAAAGAAAGCAATGCACTCTACTCTCTCCGAGATCCCACTGAGGTCATGAAGTTTCTCCAACTCTTGGTGAATTGGAAGAGGCAGCAAGAAAGGAAACATGGGAAGAAGCAAACGTCATAG 1188 0.4116 MDLKSSHGSPILTDPVPVNKSRLGIHSSLLGYSQQDSSLSAGKYTKSNSKKSIGSLDDVRSNGWLDAMKASSPPRKKLLKGSSAQVASIDYDIEDYNSWMLQYPSALDSFEKTIDRAKDKKIAMFLDYDGTLSPIVDDPDCAFMSEPMRATVRRVAKYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPASENLSKNDPNCVKSTDHQGKEITLFQPAREFLPMIDEVFKTLIEITKDIEGAKVENHRFCVSVHYRNVEENNWTTIGQLVHDVLKNYPRLRSTHGRKVLEVRPMIDWNKGKAVEFFLESLGLTDRNDVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNALYSLRDPTEVMKFLQLLVNWKRQQERKHGKKQTS* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04243 395 FunFam Trehalose 6-phosphate phosphatase 229 388 - -
Rops2g04243 395 NCBIfam trehalose-phosphatase 120 379 IPR003337 GO:0003824|GO:0005992
Rops2g04243 395 SUPERFAMILY HAD-like 123 383 IPR036412 -
Rops2g04243 395 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Rops2g04243 395 FunFam Trehalose 6-phosphate phosphatase 122 211 - -
Rops2g04243 395 NCBIfam HAD-IIB family hydrolase 124 342 IPR006379 -
Rops2g04243 395 CDD HAD_TPP 123 373 - -
Rops2g04243 395 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 41 391 IPR044651 GO:0004805|GO:0005992
Rops2g04243 395 Gene3D - 222 394 IPR023214 -
Rops2g04243 395 Gene3D - 122 210 IPR023214 -
Rops2g04243 395 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04243 Rops-Chr2 77179580 77184904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04243 118 378 Trehalose Biosynthesis Gene Families AT1G70290 26.449 6.75e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04243 K01087 - tcc:18606311 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04243 2 77179580 77184904 Rops2g04243 2 77179580 77184904 ECH