Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04239 ATGTCATCCTCTTCAACTACATCATCACTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTGCAATGCAATATTTGTGATACCATCCTTGCTGTGAGTGTTCCCTGCACAAGCTTGTTCAAGACTGTCACTGTCAGATGCGGCCATTGCACTAACCTCCTGCCGGTGAACATGCGTGCTTTACTTCTGCCATCACCCAATCAATTTCATTTGGCTCACTCTTTCTTCTCCCCTTCTCATAACCTTCTGGAGGAGATGCCAAACCCATCTCCAAATTTTCTTATGAATCACACCAATGCATCAAATGACTTCCCTGTGCCTGCTAGGACTGCTGCTGATGAGCTTCCAAGGCCACCGATCATAAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCTTACAACCGCTTCATTAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACCATAAAGAAGACCAATGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGAAAGATGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCCCACTAA 642 0.4782 MSSSSTTSSLDHLPPSEQLCYVQCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLAHSFFSPSHNLLEEMPNPSPNFLMNHTNASNDFPVPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTIKKTNVCQQEGEEVLMKDGFYASANVGVSPH* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04239 213 Gene3D High mobility group box domain 122 173 IPR036910 -
Rops2g04239 213 Pfam YABBY protein 15 177 IPR006780 GO:0007275
Rops2g04239 213 SUPERFAMILY HMG-box 121 170 IPR036910 -
Rops2g04239 213 CDD HMG-box_SF 131 167 - -
Rops2g04239 213 PANTHER PROTEIN YABBY 6-RELATED 1 187 IPR006780 GO:0007275
Rops2g04239 213 FunFam Axial regulator YABBY 122 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04239 Rops-Chr2 77079963 77082555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04239 26 211 C2C2-YABBY Transcription Factor Family AT4G00180 60.766 7.93e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops2g04239 YABBY 1.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04239 K25796 - gmx:100798441 403.675