Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04238 ATGGATCAAGGTTTCACAAGGTTTAATTCTTTGGGGGCAGATATGGACACATTTTCACATGTACCTCCAGGCTTTCGGTTTCATCCGACTGATGAAGAACTTGTTGATTACTACCTTAGAAAAAAGGTAGCTTCTAAAAGGATTGATCTAAATGTCATCAAAGATGTTGATCTCTACAAAATTGAACCCTGGGATCTTCAAGAATTATGCAAAATAGGAACCGATGAACAAAATAACTGGTATTTCTTTAGTCATAAAGATAAGAAGTACCCAACTGGAACTCGCACCAATAGAGCTACAAATGCAGGATTCTGGAAAGCCACTGGAAGAGATAAGGCAATATACTCTAAGCATTGCTTGATTGGGATGAGAAAGACTCTAGTGTTTTACAAAGGACGAGCCCCGAATGGACAGAAGTCTGATTGGATAATGCATGAGTACCGGCTAGAAACCAATGAAAATGGAACTGTTCCGGAAGAAGGCTGGGTTGTATGTAGAGTGTTCAAGAAGCGAATGGCAACAATGCAGAAAGTGGGGGGATATGAGTCACCCTGTTGGTATGATGACCAAGTTTCCTTCATGCAAGATCTCGAATCCCCCAGGCGAATTTCTCACCCTTATGCATCATACCACCAGCACCATCCCTGCAAGCCAGAGATGGAATTGCAATACAACATACCCCATGATGCTTTCCTCCAACTTCCACAACTAGAAAGCCCCAAAGTTACTCAATCACCTGCAAGTTTGAGTGGAAGCTCAGTTATCCCTTATGGTTATGCAAGCAATAACAATGGAAACACCTTGCAGATGCAGTTGTCATCACTTACTCAAGAAGAACAGATTCAACATTTCCATCAACAAAGTCTGAACTCGTTTTATGGTAGCTATGATCAAGCAGTAGACCAAGTGACAGATTGGCGAGTACTTGACAAATTTGTTGCTTCTCAGCTCAGTCAAGACCAAGATGCTTCCAAGGAAACCAGTTATTCCAATGCAGTTGTCCTCCATGTGGCTGAAAAAATTAATGTGGTTGCAAATGGATCCAAGAAGGCTCAAATTTCCCAGGAATATGCTTCAACTTCTACCTCCAGTTGCCAAATTGACCTGTGGAAGTGA 1116 0.4176 MDQGFTRFNSLGADMDTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLNVIKDVDLYKIEPWDLQELCKIGTDEQNNWYFFSHKDKKYPTGTRTNRATNAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTVPEEGWVVCRVFKKRMATMQKVGGYESPCWYDDQVSFMQDLESPRRISHPYASYHQHHPCKPEMELQYNIPHDAFLQLPQLESPKVTQSPASLSGSSVIPYGYASNNNGNTLQMQLSSLTQEEQIQHFHQQSLNSFYGSYDQAVDQVTDWRVLDKFVASQLSQDQDASKETSYSNAVVLHVAEKINVVANGSKKAQISQEYASTSTSSCQIDLWK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04238 371 ProSiteProfiles NAC domain profile. 21 170 IPR003441 GO:0003677|GO:0006355
Rops2g04238 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 283 - -
Rops2g04238 371 FunFam NAC domain-containing protein 30 174 - -
Rops2g04238 371 Gene3D NAC domain 30 174 IPR036093 GO:0003677|GO:0006355
Rops2g04238 371 Pfam No apical meristem (NAM) protein 22 149 IPR003441 GO:0003677|GO:0006355
Rops2g04238 371 SUPERFAMILY NAC domain 18 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04238 Rops-Chr2 77038054 77041949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04238 15 369 NAC Transcription Factor Family AT1G62700 55.746 2.42e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g04238 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04238 - - gmx:100783529 601.668