Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04236 ATGGCTGACGAAGCCAAAGCCAAAGGCAACGCCGCTTTCTCCGCCGGCGATTTCAACACCGCCGTCCGCCACTTCTCTGACGCCATCGCCCTCTCCCCTGAAAACCACGTCCTCTACTCTAACCGATCCGCAGCCTACGCTTCCCTTCACAAATACGCCGAAGCGTTAGCCGACGCCGAGAAAACCGTCGAACTCAAACCCGACTGGTCCAAGGGCTACAGCCGCCTCGGCGCCGCACACCTTGGCCTCGGCCACCCATACGACGCCGTTTCCGCTTACAAAAAGGGTCTCCAAATCGACCCCAACAATGAGGCCCTCAAATCCGGCTTAGCCGATGCCCAAGCCGCGGCTTCGGCTTCTTCTTCTTCACGTTCGGGTAGCCCCTTCGGAGACGCCTTCTCCGGCCCAGAGATGTGGGCCCGCCTCACTGCTGACCCCACCACCAGGGCCTATCTTCAGCAACCTGATTTCGTGAAGATGATGCAGGATATTCAGAAGGACCCTAACAAACTCAACTTGCATGTGAAGGACCAAAGGGTCATGCAAGCCCTTGGGGTTTTGCTCAATCTCAAGATTCGAACCCCTGACGATGAGAACAACGACGCTGAAATGCCGGAGTCTTCTGCCGAACCTGAACCTGAACCTCAGCCCAAGCCCCAGCCCGAACCGGAACCCGAACCTGAGCCTATGGAATTGACGGAGGAGGAGAAGGAAGCTAAGGAGAAGAAGGTTCAGGCTCAGAAGGAAAAGGAAGCAGGCAATGCGGCTTACAAGAAGAAGGATTTCGAAACGGCAATTCAACATTACTCGAAGGCTATGGAGTTGGATGATGAGGACATTTCTTACCTCACTAACCGTGCAGCTGTTTACTTAGAGATGGGAAAGTTTGAGGAATGCATAAAAGATTGTGACAAGGCTGTTGAAAGGGGAAGAGAACTAAGAACAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAACTGCATTGGTCAAAATGGCAAAATGCTCTAAGGATTATGAACCTGCTATTGAGACTTTCCATAAAGCACTCACAGAGCACCGCAATCCCGACACTTTGAAGAAACTGAATGATGCTGAAAAGGCTAAAAAGGAACTGGAGCAACAAGAATATTTTGATCCAAAATTGGCTGATGAGGAGAGAGAAAAAGGAAATGAATTCTTCAATCAGCAGAAGTATCCTGAGGCTGTGAAGCATTACACAGAGGCTATAACAAGGAACCCTAAAGATCCTAGGGCTTACAGCAACAGGGCTGCGTGCTATACAAAACTGGGGGCAATGCCTGAAGGTCTAAAAGATGCGGAGAAATGCATTGAGCTTGATCCAACCTTTTCCAAGGGTTATACCAGGAAAGGTGCAGTACAGTTTTTCATGAAAGAATATGACAAAGCTTTGGAAACATATCAGGAGGGCTTGAAACATGACCCTAAAAATCAGGAGTTGCTTGATGGTATTAAAAGATGTGTAGAACAAATTAATAAGGCTAGCCGTGGAGATTTAAGTCCTGAGGAGTTAAAGGAGAGACAGGCCAAGGCAATGCAGGACCCAGAGATACAGCGCATCCTCCAAGACCCTGTTATGAGACAAGTATTGGTTGATTTCCAGGAAAATCCCACGGCTGCACAGGAACATACAAAGAATCCAATGGTGATGAACAAGATTCAAAAGCTTATCAGTGCTGGGATTGTCCAGATGAAGTGA 1725 0.4881 MADEAKAKGNAAFSAGDFNTAVRHFSDAIALSPENHVLYSNRSAAYASLHKYAEALADAEKTVELKPDWSKGYSRLGAAHLGLGHPYDAVSAYKKGLQIDPNNEALKSGLADAQAAASASSSSRSGSPFGDAFSGPEMWARLTADPTTRAYLQQPDFVKMMQDIQKDPNKLNLHVKDQRVMQALGVLLNLKIRTPDDENNDAEMPESSAEPEPEPQPKPQPEPEPEPEPMELTEEEKEAKEKKVQAQKEKEAGNAAYKKKDFETAIQHYSKAMELDDEDISYLTNRAAVYLEMGKFEECIKDCDKAVERGRELRTDFKMIARALTRKGTALVKMAKCSKDYEPAIETFHKALTEHRNPDTLKKLNDAEKAKKELEQQEYFDPKLADEEREKGNEFFNQQKYPEAVKHYTEAITRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFFMKEYDKALETYQEGLKHDPKNQELLDGIKRCVEQINKASRGDLSPEELKERQAKAMQDPEIQRILQDPVMRQVLVDFQENPTAAQEHTKNPMVMNKIQKLISAGIVQMK* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04236 574 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Rops2g04236 574 FunFam Stress-induced phosphoprotein 1 243 377 - -
Rops2g04236 574 SUPERFAMILY TPR-like 384 497 IPR011990 GO:0005515
Rops2g04236 574 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Rops2g04236 574 Coils Coil 230 252 - -
Rops2g04236 574 Gene3D Tetratricopeptide repeat domain 384 504 IPR011990 GO:0005515
Rops2g04236 574 FunFam Stress-induced phosphoprotein 1 1 116 - -
Rops2g04236 574 PANTHER TPR REPEAT CONTAINING PROTEIN 2 546 - -
Rops2g04236 574 Pfam Tetratricopeptide repeat 7 67 - -
Rops2g04236 574 SMART tpr_5 246 279 IPR019734 GO:0005515
Rops2g04236 574 SMART tpr_5 385 418 IPR019734 GO:0005515
Rops2g04236 574 SMART tpr_5 419 452 IPR019734 GO:0005515
Rops2g04236 574 SMART tpr_5 2 35 IPR019734 GO:0005515
Rops2g04236 574 SMART tpr_5 321 358 IPR019734 GO:0005515
Rops2g04236 574 SMART tpr_5 36 69 IPR019734 GO:0005515
Rops2g04236 574 SMART tpr_5 280 313 IPR019734 GO:0005515
Rops2g04236 574 SMART tpr_5 70 103 IPR019734 GO:0005515
Rops2g04236 574 SMART tpr_5 453 486 IPR019734 GO:0005515
Rops2g04236 574 Coils Coil 357 377 - -
Rops2g04236 574 MobiDBLite consensus disorder prediction 233 255 - -
Rops2g04236 574 MobiDBLite consensus disorder prediction 192 255 - -
Rops2g04236 574 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Rops2g04236 574 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Rops2g04236 574 ProSiteProfiles TPR repeat profile. 419 452 IPR019734 GO:0005515
Rops2g04236 574 Gene3D - 505 574 - -
Rops2g04236 574 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Rops2g04236 574 SUPERFAMILY TPR-like 245 373 IPR011990 GO:0005515
Rops2g04236 574 Pfam Tetratricopeptide repeat 454 486 IPR001440 GO:0005515
Rops2g04236 574 ProSiteProfiles TPR repeat profile. 385 418 IPR019734 GO:0005515
Rops2g04236 574 Gene3D - 127 192 - -
Rops2g04236 574 Pfam STI1 domain 136 189 IPR041243 -
Rops2g04236 574 Pfam STI1 domain 515 566 IPR041243 -
Rops2g04236 574 ProSiteProfiles TPR repeat profile. 453 486 IPR019734 GO:0005515
Rops2g04236 574 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Rops2g04236 574 Gene3D Tetratricopeptide repeat domain 243 377 IPR011990 GO:0005515
Rops2g04236 574 SMART CBM 135 174 IPR006636 -
Rops2g04236 574 SMART CBM 523 562 IPR006636 -
Rops2g04236 574 FunFam hsp70-Hsp90 organizing protein 3-like 384 498 - -
Rops2g04236 574 Pfam TPR repeat 253 294 - -
Rops2g04236 574 Pfam TPR repeat 392 433 - -
Rops2g04236 574 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 506 574 - -
Rops2g04236 574 FunFam Putative stress-induced-phosphoprotein 1 126 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04236 Rops-Chr2 76964315 76968077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04236 384 480 U-box Gene Family AT3G07370 28.866 4.15e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04236 K09553 - gmx:100816776 886.715