Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04223 ATGCACCAGCAGCAGGCACAACATCAATTCCACACTTTACAGCAAAGCACAGAAGACGAGCATAGCGGAAGCAGTGGAGGACTGAAAAGGGAAAGGGAAGAAAGCAGCGGCAACAACAACAGTAACGAAGGGAAGGATGAAATAACAAGAAGACCTCGAGGAAGACCATCAGGGTCAAAGAACAAACCCAAACCACCAATCATCATCACACGTGACAGCGCAAATGCCCTAAGAACCCACGTGATGGAGGTGGCAGACGGTTGTGACATCATAGACAGCGTCTCCAACTTCGCAAGGCGGCGTCAAAGAGGGGTTTGCATCATGAGTGGAACCGGCACCGTCACCAACGTTACTCTCAGGCAACCAGCTTCTTCCGGTGCCGTTGTCACTCTTCATGGAAGGTTCGAGATCCTGTCCCTCGCCGGATCGTTCTTGCCACCACCGGCTCCGCCACCTACCTCAGGTTTGACCATATATTTGGCCGGTGGTCAGGGACAGGTAGTAGGTGGAAGTGTGGTTGGCACACTTGTTGCTTCAGGGCCTGTAGTGATCATGGCGGCTTCATTTAGCAACGCTGCTTATGAGAGACTTCCTTTGGAAGAAGAGGAACCTTCTTTGCCACTGCAAGAAGGTTCAATTGGTCAACAACAGTCACAACAGCTTTTAGGGGATGCAACTGCTCCACTTTTCCATGGCTTTCCACCTCCTAATCTTCTCAACCCTATTCAGATGCCATCTGACTGGCCAACTGCTCGCCCTCCATACTGA 768 0.513 MHQQQAQHQFHTLQQSTEDEHSGSSGGLKREREESSGNNNSNEGKDEITRRPRGRPSGSKNKPKPPIIITRDSANALRTHVMEVADGCDIIDSVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPPTSGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEEEEPSLPLQEGSIGQQQSQQLLGDATAPLFHGFPPPNLLNPIQMPSDWPTARPPY* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04223 255 MobiDBLite consensus disorder prediction 23 54 - -
Rops2g04223 255 MobiDBLite consensus disorder prediction 1 69 - -
Rops2g04223 255 ProSiteProfiles PPC domain profile profile. 74 212 IPR005175 -
Rops2g04223 255 CDD DUF296 78 189 IPR005175 -
Rops2g04223 255 FunFam AT-hook motif nuclear-localized protein 77 204 - -
Rops2g04223 255 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g04223 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 191 IPR005175 -
Rops2g04223 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 215 IPR014476 GO:0003680
Rops2g04223 255 Gene3D - 77 207 - -
Rops2g04223 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 205 - -
Rops2g04223 255 PIRSF ESCAROLA 1 233 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04223 Rops-Chr2 76768032 76768799 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04223 28 255 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 59.774 3.60e-80 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04223 - - gmx:100807581 317.39