Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04219 ATGGAGGCTAGTGGTGGTGTTAGTGGCGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGAATACCATGTAGCTCCGAGGACCGAAAACCCAGCTCCGGCAAGTGGATCGACGACACAGGTTTCGGCGGCGACGACGACACAAGGGAATGTTCCGCCGCCGCTTACGGTGTCTCCGGCAGCCTCAACGATGCCGACTAAGAAGAAGAGGGGTCGACCGAGAAAGTATGCACCGGACGGGTCGGTGACCAGGGCACTGTCTCCTAAGCCGATATCTTCTTCTGCTCCGTTGCCGCCTGTGATCGATTTCTCTGCGGAGAAGAAGGCAAAAGTGCGGCCAGCTAGCTCGGTGAACAAAGCCAAATTTGAGTTGGAGAATTTTGGTGAATGGGTTGCTTGCTCAGTTGGTGCTAATTTTACACCCCATATCATCACTGTTAATACGGGGGAGGATGTTACTATGAAGATAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCAAGTGGAGCCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACTTACGAGGGCCGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCAAGTGAAAGTGGAGGAACACGAAGCAGATCAGGTGGCATGAGTGTTTCTTTAGCAAGTCCCGATGGACGTGTTGTAGGTGGAGGAGTAGCTGGTCTGTTGGTTGCTGCAGGCCCTGTGCAGGTAGTTGTAGGCAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGCCAAAAAAACAAAGACATGAGGTTATATCAACTGTTACGCCTGCTGCAGTTGTTCCCATCTCTACTCTTGATCCAATACCTATTCTATCATCAGCAGCATCTTCCTTCCGTGGAGATAATTGGTCTGCTACTGCTGTGCCAGCGGATGCCAATAATAATAAGCCAACTGACATTAACGTGTCACTTCCTGGAGGGTAA 987 0.5046 MEASGGVSGGVTVVGSDAPSEYHVAPRTENPAPASGSTTQVSAATTTQGNVPPPLTVSPAASTMPTKKKRGRPRKYAPDGSVTRALSPKPISSSAPLPPVIDFSAEKKAKVRPASSVNKAKFELENFGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSASGAISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAAGPVQVVVGSFLAGNQHEQKPKKQRHEVISTVTPAAVVPISTLDPIPILSSAASSFRGDNWSATAVPADANNNKPTDINVSLPGG* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04219 328 CDD DUF296 140 231 IPR005175 -
Rops2g04219 328 Gene3D - 141 273 - -
Rops2g04219 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 282 IPR039605 GO:0003680
Rops2g04219 328 MobiDBLite consensus disorder prediction 31 63 - -
Rops2g04219 328 MobiDBLite consensus disorder prediction 1 97 - -
Rops2g04219 328 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 261 - -
Rops2g04219 328 ProSiteProfiles PPC domain profile profile. 136 278 IPR005175 -
Rops2g04219 328 FunFam AT-hook motif nuclear-localized protein 1-like 141 271 - -
Rops2g04219 328 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 254 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04219 Rops-Chr2 76644883 76649675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04219 1 325 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.452 8.53e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04219 - - gmx:100794202 487.263