Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04194 ATGGGTAGGCAACCTTGCTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAGAAACTCATCAACTTCATTCTCACCAATGGACAGTGTTGTTGGCGTGCTGTGCCTAAGCTTGCTGGCCTTAGGCGTTGTGGTAAGAGTTGCAGGCTTCGTTGGACTAATTATCTTAGGCCAGACTTAAAGAGAGGGCTCCTCACAGAAGCAGAGGAGCAGCTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACCCATATCAAGAAAAAACTCATTAAGATGGGTATTGATCCAGTTACTCATGAACCTCTCAATAAACAAGCTGCATCCCAGGATAGTTCATCCCCTGCAGAGCAATTGCCACAACCAAGCAATAACCATCAGGCCAAGGAAACTGATGGGGTTCTCAACTCAGAGGAGAATTCAAGCTCATCCCCAGCTGAAAATTCTTCTGGAGAAGAATCCCTTTTGCTAGATAGCATTTGCAGTGATGACTCTCTAATAAATAGCCTGTGGCTAGATGAAACTCCACTGGTGGAAGCATTATGGGACACTACACCTATAGAAGAGAATACTAAAAATGACATAGGTATGCAGCCATCTTGGGAGGAGAATTGTGCTTGGCTATTCGACTGTCAGGACTTTGGTGTTCATGATTTTGGGTTTAACTGTTTCAATGAGATAGAGTCAAATGCACTGCAAACTATAGGTATGAACAAAAAGGAGCATTAG 807 0.4411 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLNKQAASQDSSSPAEQLPQPSNNHQAKETDGVLNSEENSSSSPAENSSGEESLLLDSICSDDSLINSLWLDETPLVEALWDTTPIEENTKNDIGMQPSWEENCAWLFDCQDFGVHDFGFNCFNEIESNALQTIGMNKKEH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04194 268 Gene3D - 71 159 - -
Rops2g04194 268 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops2g04194 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g04194 268 FunFam MYB transcription factor 11 67 - -
Rops2g04194 268 PANTHER F14D16.11-RELATED 1 169 - -
Rops2g04194 268 CDD SANT 16 61 IPR001005 -
Rops2g04194 268 MobiDBLite consensus disorder prediction 130 179 - -
Rops2g04194 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g04194 268 Gene3D - 12 67 - -
Rops2g04194 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g04194 268 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Rops2g04194 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops2g04194 268 FunFam MYB transcription factor 70 147 - -
Rops2g04194 268 CDD SANT 71 112 IPR001005 -
Rops2g04194 268 SMART sant 13 63 IPR001005 -
Rops2g04194 268 SMART sant 66 114 IPR001005 -
Rops2g04194 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04194 Rops-Chr2 76343830 76345591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04194 1 260 MYB Transcription Factor Family AT4G12350 57.447 3.87e-103 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g04194 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04194 K09422 - gmx:100786965 471.855