Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04190 ATGAAGTGTAAATCATCAGCATTATCTTTTGATGAATTTGATAGAAAACCTAGTGAAATCAAGAAGAGGAAGATCATGCATAGAGATATTGAAAGACAAAGAAGGCAAGAAATGGCCACTCTTCATGCTTCTCTGCGGTCACTGCTCCCTGTAGAATACTTAAAGGGAAAGCGTTCAATATCAGATCACATTCATCAGGCGGTGAATTATATCAAGCATCTTCAGAACAAGACAGAGAAGCTAAGTAACAAGCGAGATGAGCTGCGAAAATTGCGCAACCGAACAATGGAGAATTCTCAGGCAGCCAAACAGGATGTTGTTGTGACAGTTAGACCATGTTGGGTAGGAGTAGAGGTTGTCATAAACACTGCACTTCAAGAAGGGCTTCCTCTTTCAATAGTGCTCCAAGCTCTAATCAGAGAAGGGCTCAGAATTATCCATTGCAATTCAACTAAAGTAAAAGGAAGGTTATTTCATACCATCGAATCCGAGGTGAGCAATGGTGGAAGAAGAATTGATCAGTCTGAGCTGCAACAAAAACTGTCAAACTTAATCAGTCAATCTTAA 567 0.4004 MKCKSSALSFDEFDRKPSEIKKRKIMHRDIERQRRQEMATLHASLRSLLPVEYLKGKRSISDHIHQAVNYIKHLQNKTEKLSNKRDELRKLRNRTMENSQAAKQDVVVTVRPCWVGVEVVINTALQEGLPLSIVLQALIREGLRIIHCNSTKVKGRLFHTIESEVSNGGRRIDQSELQQKLSNLISQS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04190 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 89 IPR036638 GO:0046983
Rops2g04190 188 Gene3D - 14 106 IPR036638 GO:0046983
Rops2g04190 188 CDD bHLH_AtORG2_like 23 91 - -
Rops2g04190 188 Pfam Helix-loop-helix DNA-binding domain 23 75 IPR011598 GO:0046983
Rops2g04190 188 FunFam Transcription factor bHLH126 14 102 - -
Rops2g04190 188 Coils Coil 71 105 - -
Rops2g04190 188 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 21 186 - -
Rops2g04190 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 74 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04190 Rops-Chr2 76287160 76287989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04190 24 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.429 3.04e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g04190 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04190 - - aprc:113851145 278.87