Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04186 ATGTACCGCAGAGTACCATGTGTAAGGAGTGGAGGGCTTCGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTGGTTTATGTGATGAATGTGGGAGGTGGAGGAGATATTGCAAACATGTGGGTGAAAGGAAGCAGAACAGGATGGATTAGCATGAGCCATAACTGGGGAGCTTCTTACCAGGCATTTGCAACATTGAGTGGTCAAGCTCTTTCCTTCAAGATTGTTTCCTACACAACCAAAGAAACTATAATAGCATGGAATGTTGCTCCTGCTAACTGGGGTGCAGGACTAACTTATTCCACCAATGTCAACTTCCATTAA 324 0.4352 MYRRVPCVRSGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLSGQALSFKIVSYTTKETIIAWNVAPANWGAGLTYSTNVNFH* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04186 107 Gene3D - 13 107 IPR036749 -
Rops2g04186 107 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 22 102 IPR007117 -
Rops2g04186 107 PRINTS Expansin signature 11 23 IPR002963 GO:0009664
Rops2g04186 107 PRINTS Expansin signature 88 104 IPR002963 GO:0009664
Rops2g04186 107 PRINTS Expansin signature 23 44 IPR002963 GO:0009664
Rops2g04186 107 SUPERFAMILY PHL pollen allergen 9 101 IPR036749 -
Rops2g04186 107 Pfam Expansin C-terminal domain 14 91 IPR007117 -
Rops2g04186 107 PANTHER EXPANSIN-A15 2 102 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04186 Rops-Chr2 76273718 76274495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04186 2 107 Expansin Gene Family AT1G12560 73.585 4.61e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04186 - - tcc:18606420 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04186 2 76273718 76274495 Rops2g04186 2 76273718 76274495 ECH
Rops2g04186 2 76273718 76274495 Rops1g02130 1 42535473 42536537 PCT