Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04180 ATGGAAGAAGCAGGGTTGGGAATGATGAGTGGTGCTTTAAGCGGAGAAGTGTCCTCTCACCACCGTCAAGTGAAGGCGGAGATAGCAACTCACCCACTCTATGAACAGCTTCTGGCTGCACACGTGTCATGCCTCCGTGTGGCCACTCCCATCGATCATCTCCCACTCATCGATGCCCAGTTGTCGCAGTCACACCATATCTTTCACTCTTATGCCTCTCACCACTCACTTCATCACCCACAAGACCTTGATAATTTCCTGGCACAATATTTGATTGTGTTGTGTACCTTCAAAGAACAGCTTCAGCATCATGTCAGAGTCCATGCTGTTGAGGCTGTAATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTAACAGGGGTCTGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGAAGATTTGCAGATGGATATTTCTTTAGATCAGTCAAGCTCTGATGGGCTTGACATGACAGGATTTGGTCCATTACTTCCTACAGAATCTGAAAAGTCCCTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTAAGAAAACGAAGAGCTGGGAAATTACCAGGTGACACAACATCGGTTTTGAAGACCTGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAACTGTCAATCGGTTACCTCTCTGAAGTCCAAGCGCAAGAGAGACTATTCCCACTAA 855 0.4608 MEEAGLGMMSGALSGEVSSHHRQVKAEIATHPLYEQLLAAHVSCLRVATPIDHLPLIDAQLSQSHHIFHSYASHHSLHHPQDLDNFLAQYLIVLCTFKEQLQHHVRVHAVEAVMACRDIESTLQALTGVCLGEGTGATMSDDEEDLQMDISLDQSSSDGLDMTGFGPLLPTESEKSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNCQSVTSLKSKRKRDYSH* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04180 284 Gene3D - 205 267 - -
Rops2g04180 284 ProSiteProfiles ELK domain profile. 184 204 IPR005539 GO:0003677
Rops2g04180 284 FunFam homeobox protein knotted-1-like 3 isoform X1 205 266 - -
Rops2g04180 284 SMART HOX_1 206 271 IPR001356 GO:0003677
Rops2g04180 284 SMART KNOX2_2 73 128 IPR005541 GO:0003677|GO:0005634
Rops2g04180 284 ProSiteProfiles 'Homeobox' domain profile. 204 267 IPR001356 GO:0003677
Rops2g04180 284 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
Rops2g04180 284 SUPERFAMILY Homeodomain-like 206 268 IPR009057 -
Rops2g04180 284 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 56 266 - -
Rops2g04180 284 Pfam KNOX1 domain 24 65 IPR005540 GO:0003677|GO:0005634
Rops2g04180 284 Pfam Homeobox KN domain 224 263 IPR008422 GO:0003677|GO:0006355
Rops2g04180 284 Pfam KNOX2 domain 78 127 IPR005541 GO:0003677|GO:0005634
Rops2g04180 284 CDD homeodomain 207 267 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04180 Rops-Chr2 76111719 76120609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04180 1 279 Homeobox Transcription Factor Family AT1G62990 75.427 4.05e-161 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops2g04180 KNOX2 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04180 - - gmx:100782179 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04180 2 76111719 76120609 Rops2g04180 2 76111719 76120609 ECH
Rops2g04180 2 76111719 76120609 Rops1g02136 1 42623773 42629776 PCT