Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04172 ATGAATTCATTTGATGAATCCAATAACTGGCACATGTCTGAGTACTACTCATGTTCATCAACGGAAACGACCTCCTCTAATCGTCCAAACACTTCTAACTCTGATGAAGAAATATTATTAGCATCGGCGAGGCCAAAGAGGCGTGCGGGGCGTCGAATATTCAAGGAGACAAGGCACCCGGTGTACCGTGGAGTGCGACGGAGGAACAACAACAAGTGGGTTTGTGAGGTTCGTGTTCCCAACGACAAGTCCAAAAGGATTTGGTTAGGAACCTACCCAACACCTGAGATGGCGGCACGTGCACACGACGTTGCCGCACTCGCGCTTAGGGGGAAATCAGCTTGCCTCAACTTCGCCGACTCAGCGTGGCGGTTGCCTTTGCCGGCGTCGACTAATGCTAAGGAGATAAGGAGGGTGGCGGCGGAGGCTGCTGAGGCATTTGCGGTTGGAGAAAGTTGCACGCAACTAACTGATTGTGAGGTTTGCAGCAGTGATAACATTGGCGTCAGTGTTATGGAAGATTCCAATGATAAAGGTGTCAGTGTAGTGGAAGATTCCAATGATAAACCTTTGAATAGATTTTGTGTGGATGAAGTTTCAGGTGTATCGGCATTTGAGGATTGGCTTCAGAATATGGCTGATGAGCCTTTACGATCTCCTCCTCCTTTTGTAAGATATGGTTGGGAATGGAACGATGTGGAGGTTGATGCCGAGGTGTCCTTGTGGAGCTTTACTATCTGA 741 0.4858 MNSFDESNNWHMSEYYSCSSTETTSSNRPNTSNSDEEILLASARPKRRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSKRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAEAAEAFAVGESCTQLTDCEVCSSDNIGVSVMEDSNDKGVSVVEDSNDKPLNRFCVDEVSGVSAFEDWLQNMADEPLRSPPPFVRYGWEWNDVEVDAEVSLWSFTI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04172 246 Pfam AP2 domain 60 111 IPR001471 GO:0003700|GO:0006355
Rops2g04172 246 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Rops2g04172 246 MobiDBLite consensus disorder prediction 20 42 - -
Rops2g04172 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 244 IPR045277 GO:0003700
Rops2g04172 246 Gene3D AP2/ERF domain 61 120 IPR036955 GO:0003700|GO:0006355
Rops2g04172 246 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Rops2g04172 246 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Rops2g04172 246 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Rops2g04172 246 FunFam Ethylene-responsive transcription factor 2 60 120 - -
Rops2g04172 246 MobiDBLite consensus disorder prediction 20 38 - -
Rops2g04172 246 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Rops2g04172 246 SUPERFAMILY DNA-binding domain 61 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04172 Rops-Chr2 75978149 75979125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04172 1 244 AP2-EREBP Transcription Factor Family AT4G25470 48.988 3.15e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g04172 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04172 - - pvu:PHAVU_003G212800g 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04172 2 75978149 75979125 Rops2g04172 2 75978149 75979125 ECH
Rops2g04172 2 75978149 75979125 Rops1g02145 1 42792391 42793575 PCT