Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g04171 ATGGCTTCATCATCATCATCTTCATCTTCTTGTAAGAGGCACCCTGTGTACCATGGAATCCGGTGCCGTGGAGGAAAATGGGTGACTGAAATCCGAGAGCCACGGAAGACAACCCGCATATGGCTTGGCACATTCCCCACCCAAGAGATGGCAGCGGCAGCCTATGATGTGGCGGCGTTGGCCCTCAAAGGCGGTGAAGCAGTACTCAACTTCCCTGACTCAGTTGACAAGTATCCAGTTCCGGCATCCAAATCCCCAGCTGATATCCGCAGGGCTGCCACTTCTGCAGCCCAATTAATGAAGGTTGAACCCAGTCACAGCAACAAATCCACTGATGATAAAGTTAATGAGCCTCATAACACTGATGCTGTTGCTGATGTTACTCCTTTTTCTGAAACTGAGTTCATGGACGAGGAAGCCATATTCTCCATGCCAAGTTTGCTGGTTGATATGGCTGAGGGAATGCTGCTTTCCCCACCCAGAATGAACCCACCACATTCCGATTACTCGCCTGAAAATTCCTGTGGAGAAAGTTTGTGGAACTATTATTGA 552 0.4909 MASSSSSSSSCKRHPVYHGIRCRGGKWVTEIREPRKTTRIWLGTFPTQEMAAAAYDVAALALKGGEAVLNFPDSVDKYPVPASKSPADIRRAATSAAQLMKVEPSHSNKSTDDKVNEPHNTDAVADVTPFSETEFMDEEAIFSMPSLLVDMAEGMLLSPPRMNPPHSDYSPENSCGESLWNYY* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g04171 183 Gene3D AP2/ERF domain 16 73 IPR036955 GO:0003700|GO:0006355
Rops2g04171 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 182 IPR045277 GO:0003700
Rops2g04171 183 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Rops2g04171 183 ProSiteProfiles AP2/ERF domain profile. 16 72 IPR001471 GO:0003700|GO:0006355
Rops2g04171 183 CDD AP2 17 74 IPR001471 GO:0003700|GO:0006355
Rops2g04171 183 MobiDBLite consensus disorder prediction 100 122 - -
Rops2g04171 183 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Rops2g04171 183 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Rops2g04171 183 MobiDBLite consensus disorder prediction 106 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g04171 Rops-Chr2 75963275 75964289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g04171 13 182 AP2-EREBP Transcription Factor Family AT5G52020 55.114 8.09e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g04171 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g04171 - - vra:106768065 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04171 2 75963275 75964289 Rops2g04171 2 75963275 75964289 ECH
Rops2g04171 2 75963275 75964289 Rops1g02148 1 42863247 42863795 PCT